PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G118400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 407aa    MW: 44393.1 Da    PI: 7.1284
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G118400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.4e-071760339
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                        +r C+ + + +++++C  ++ +lC+ C  + H+        H+v
  Sevir.9G118400.1.p 17 ARSCDGCMRRRARWHCPADDAFLCQACDASVHSAnplarrhHRV 60
                        678*****************************668888886655 PP
2CCT67.24.5e-23322365144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Sevir.9G118400.1.p 322 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 365
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7271562IPR000315B-box-type zinc finger
SMARTSM003363.6E-81562IPR000315B-box-type zinc finger
PfamPF006432.2E-51759IPR000315B-box-type zinc finger
CDDcd000212.13E-111862No hitNo description
PfamPF062039.1E-18322364IPR010402CCT domain
PROSITE profilePS5101715.993322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTNAGAATGA VLGARTARSC DGCMRRRARW HCPADDAFLC QACDASVHSA NPLARRHHRV  60
RLPSASCSSP PRDPDAPAWL HGLKRRPRTP RSKPGVSKHE TTPASIAAAV SAAVPDLEAE  120
ESAGSGIVGD NDYHGLEEDD EDLLYRVPVF DPMLAELYNP VADEGEQKPA ACLISSLAET  180
SPEFASGLAE ADGLSGYDVP DMELASFAAD MESLLMGVDE GFDDLGFLDE EKPQVNVDLG  240
SMNLETMAAP APERDDKKRK RPEMILKLNY DGVIASWARD GGSPWFHGER PHLDPHESWS  300
DFPAGSRGLL GGTVTAVTGG EREARVSRYR EKRRTRLFAK KIRYEVRKLN AEKRPRMKGR  360
FVKRSSLPPL PRPPPPPSQQ QQPRAMMPHV GMVLAPPLGA HGRFRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288LKRRPRT
2332348RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G118400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278430.0KJ727843.1 Zea mays clone pUT5887 C2C2-CO-like transcription factor (COL8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982006.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLK4AAN00.0K4AAN0_SETIT; Uncharacterized protein
STRINGSi035937m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-63B-box type zinc finger protein with CCT domain