PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G108600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 485aa MW: 51442.5 Da PI: 8.2357

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G108600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	260.3	6.7e-80	75	473	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l +lLl+ + a ++gd ++a+a+L ++ +as g dp R+aayf+ ALa+rl+r + +++s+ + e++ a+++f+++sP+ Sevir.7G108600.1.p 75 LMHLLLTSVAAGEAGDVHAATAALHEVYRRASFGGgDPAPRVAAYFADALASRLLR------SPVAASPPT---RGEQFLAYTMFYQASPL 156 5799**************************9999****************......555555555...7888999****** PP GRAS 91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....eg.............ppslRiTgvgspesgskeeleetg 162 ++f+h+taNqaI+ea+e+ +r+H++Dfd+s+G+QWp+L+q+L++ + +g p slRiTg+g s++el++t+ Sevir.7G108600.1.p 157 YQFAHFTANQAIVEAFERGgrRRLHVVDFDVSYGFQWPSLIQSLSDAAvtstSGgshdgdgdgdskePVSLRITGLGT----SADELRQTE 243 ************9876699******************888655511678888889998677*****....9**** PP GRAS 163 erLakfAeel.gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.ns 250 rL++fA+ + +v+fef+ +v + l+ + ++ + + +++Vnl++ r+ ++s+++ L v+sl+P +v +ve+ + n+ Sevir.7G108600.1.p 244 ARLTRFASGCpNVRFEFEGVVNGPSSGLHERIIKNDGdDATVVVNLAFPAARTS--PTSTRE-ACGDLARVRSLNPSLVFLVERGGSSsNG 331 ***98769***88889999988888888856678999999988886..444444.5677*************9777455 PP GRAS 251 e.....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac......egaerrerhetlekWrerleeaGFkpvpls 330 + s+l f+ +l+y++a+fdsl++ lp++s er +Er +lg ei+n+v+ g +++++ + + W++++e+aGF+ v+ls Sevir.7G108600.1.p 332 TprgrsSLLPPFTASLRYFAAVFDSLHECLPADSAERLAIERNYLGVEISNAVSSldrshgGGGDHTAEPSSSACWKDMMESAGFQGVALS 422 4677779******************************************97322222455689999999************** PP GRAS 331 ekaakqaklllrkvk.sdg....yrveee.sgslv.lgWkdrpLvsvSaWr 374 +++++qaklll++ + g +rv e g ++ lgW+d +L++++aWr Sevir.7G108600.1.p 423 SRTVSQAKLLLKMKSgCAGsgggFRVIEGdGGRAMsLGWRDSALITTTAWR 473 *******9976544444569987661444446************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.638	49	446	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-77	75	473	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MNLTLSLAIN GGTSTGTGKK RKVRDSVVID DVGDGGDRSR VLRILQARER MMARLEVDDP 60 RVAHDDGGGS GGLRLMHLLL TSVAAGEAGD VHAATAALHE VYRRASFGGG DPAPRVAAYF 120 ADALASRLLR SPVAASPPTR GEQFLAYTMF YQASPLYQFA HFTANQAIVE AFERGGRRRL 180 HVVDFDVSYG FQWPSLIQSL SDAAVTSTSG GSHDGDGDGD SKEPVSLRIT GLGTSADELR 240 QTEARLTRFA SGCPNVRFEF EGVVNGPSSG LHERIIKNDG DDATVVVNLA FPAARTSPTS 300 TREACGDLAR VRSLNPSLVF LVERGGSSSN GTPRGRSSLL PPFTASLRYF AAVFDSLHEC 360 LPADSAERLA IERNYLGVEI SNAVSSLDRS HGGGGDHTAE PSSSACWKDM MESAGFQGVA 420 LSSRTVSQAK LLLKMKSGCA GSGGGFRVIE GDGGRAMSLG WRDSALITTT AWRRRRRSID 480 KTSS*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MNLTLSLAIN GGTSTGTGKK RKVRDSVVID DVGDGGDRSR VLRILQARER MMARLEVDDP  60
RVAHDDGGGS GGLRLMHLLL TSVAAGEAGD VHAATAALHE VYRRASFGGG DPAPRVAAYF  120
ADALASRLLR SPVAASPPTR GEQFLAYTMF YQASPLYQFA HFTANQAIVE AFERGGRRRL  180
HVVDFDVSYG FQWPSLIQSL SDAAVTSTSG GSHDGDGDGD SKEPVSLRIT GLGTSADELR  240
QTEARLTRFA SGCPNVRFEF EGVVNGPSSG LHERIIKNDG DDATVVVNLA FPAARTSPTS  300
TREACGDLAR VRSLNPSLVF LVERGGSSSN GTPRGRSSLL PPFTASLRYF AAVFDSLHEC  360
LPADSAERLA IERNYLGVEI SNAVSSLDRS HGGGGDHTAE PSSSACWKDM MESAGFQGVA  420
LSSRTVSQAK LLLKMKSGCA GSGGGFRVIE GDGGRAMSLG WRDSALITTT AWRRRRRSID  480
KTSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-40	110	475	53	381	Protein SCARECROW
5b3h_A	4e-40	110	475	52	380	Protein SCARECROW
5b3h_D	4e-40	110	475	52	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G108600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975641.1	0.0	DELLA protein DWARF8
TrEMBL	K3Y6Y1	0.0	K3Y6Y1_SETIT; Uncharacterized protein
STRING	Si009972m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11649	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	7e-48	RGA-like 2

Link Out ? help Back to Top
Phytozome	Sevir.7G108600.1.p