PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G233400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 496aa    MW: 52142.9 Da    PI: 6.5528
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G233400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52e-062061237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        +++ C+ ++e  + l+C+ +   lC  C  + H        H
  Sevir.6G233400.1.p 20 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 61
                        7899*******9******************999545555555 PP
2CCT63.46.8e-22443486144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R+ a++RY+eKrk+R++eK+irYesRK +A++R+RvKGrFvk++
  Sevir.6G233400.1.p 443 RDSAMQRYREKRKNRRYEKHIRYESRKLRADTRKRVKGRFVKST 486
                         899***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-111966IPR000315B-box-type zinc finger
PROSITE profilePS501199.841966IPR000315B-box-type zinc finger
CDDcd000216.12E-82266No hitNo description
PfamPF062033.0E-16443485IPR010402CCT domain
PROSITE profilePS5101715.338443485IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MKSGGGGGGG GGGGGGGGRQ QWPCDYCGEA AAALHCRADA ARLCVACDRH VHAANALSRK  60
HVRAPLCAGC AGRPAAARVA APATAAAWGE AAFLCADCCE GADCDGGAAA RVAVEGFSGC  120
PSAAELAASW GLDLRGGGCG GDGEEEAEDD AFFSVLDYSM LGADPELRDL YVPCDPPEGA  180
AHAGGARRLK GEALCDQLAE MARREADTSH PHQPHSDLSP RTPRRNSAAS SGRLPGKMAP  240
PAPPPHHPPA AVQEVPLPYT SLLMMASANC TELIGGHDRM ADDDEQLLWD CAPPSVPPTQ  300
IWDFNLGRSR DHDEKSSIEV GFGSNHGGFM IKSYSDMLKE ISSGTTKDLE DIYDSRYCST  360
AEDIMSSNIC QVSSKNVSTG SNKRKVSPST STMDGPTTSG NHVPTSGPAL TREISFGDQT  420
VSPAGAERPA AMRIDSETLA QNRDSAMQRY REKRKNRRYE KHIRYESRKL RADTRKRVKG  480
RFVKSTEALN AGNGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G233400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974025.10.0zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A368RPK40.0A0A368RPK4_SETIT; Uncharacterized protein
STRINGSb07g025940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.13e-19B-box type zinc finger protein with CCT domain