PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G025700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 296aa    MW: 32329.4 Da    PI: 5.4403
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G025700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092292622255
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +yp++e++ +LA+ +gL+ +q+ +WF N+R ++
  Sevir.5G025700.1.p 229 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 262
                         69*****************************885 PP
2ELK33.21.1e-11182203122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++Ll+KYsg+L+ L++EF+
  Sevir.5G025700.1.p 182 ELKEMLLKKYSGCLSRLRSEFL 203
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-203680IPR005540KNOX1
PfamPF037904.3E-203877IPR005540KNOX1
SMARTSM012562.0E-2685136IPR005541KNOX2
PfamPF037911.3E-2389135IPR005541KNOX2
PfamPF037891.3E-8182203IPR005539ELK domain
PROSITE profilePS5121310.423182202IPR005539ELK domain
SMARTSM011883.6E-6182203IPR005539ELK domain
PROSITE profilePS5007112.633202265IPR001356Homeobox domain
SMARTSM003894.4E-14204269IPR001356Homeobox domain
SuperFamilySSF466898.55E-20204273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27207267IPR009057Homeodomain-like
CDDcd000863.19E-13214266No hitNo description
PfamPF059204.8E-17222261IPR008422Homeobox KN domain
PROSITE patternPS000270240263IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEDLYSIHPG ISRVGGAVSE ASVAGVGGPA PSDLTELMKA QIASHPRYPS LLSAYIECRK  60
VGAPPQVASL LEEVSREGRA GPGSGAAEIG VDPELDEFMD AYCRVLVRYK EELSRPFDEA  120
ASFLSSIQAQ LSNLCSGGSS PAATTATHSD DMMGSSEDEQ CSGDTDVPDI GQEHSSRLAD  180
HELKEMLLKK YSGCLSRLRS EFLKKRKKGK LPKDARTVLL EWWNTHYRWP YPTEEDKVRL  240
AAMTGLDPKQ INNWFINQRK RHWKPSEDMR FALMEGVAGG SSGTTLYFDT GTIGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197206LRSEFLKKRK
2203207KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G025700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7819010.0AY781901.1 Saccharum hybrid cultivar Pindar isolate c53a homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967561.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP291e-170KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A368R0G50.0A0A368R0G5_SETIT; Uncharacterized protein
STRINGSb03g012480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-85KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]