PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G229000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 475aa    MW: 50309.5 Da    PI: 9.7196
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G229000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.42.7e-93924742374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++l+l+cA+ ++ gdl +a+++   l   asp++d+  Rla +f++ALa r        +  ++p   s      +  a+ +f+++ P+l+
  Sevir.4G229000.1.p  92 RDLVLACADLLQRGDLPAARRAAGVLLSAASPRADAADRLAYHFARALALRADARAAAAAGRVAPGLVSAAARPASSGAYLAFNQIAPFLR 182
                         6799*************************************************98888888888888888888999999999********* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         f+hltaNqaIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+a+R+   +gpp++RiTg g+    ++++l +tg+rL+ fA+++++pf+f++
  Sevir.4G229000.1.p 183 FAHLTANQAILDAVEGARRIHILDLDAAHGVQWPPLLQAIAERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLRAFARSIQLPFHFTP 269
                         *******************************************988888***********....9************************** PP

                GRAS 181 l..............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sF 253
                         l               + ++++    +L+++p+E+laVn+v+ lh+l    +  ++e  ++Lk vk + P vv+v+e+e+  ++     ++
  Sevir.4G229000.1.p 270 LllscaathhhevagGSATTASSAATSLELHPDETLAVNCVMFLHKLG---G--QDEVAAFLKWVKAMAPAVVTVAEREMIGGGYdridDL 355
                         *99987766655433233444447899********************8...2..233578*******************76644334559* PP

                GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                          +r + a+++ysa+f++lea++p+ s+er  vE+e+lgrei+  +  +g +     + le+W ++ ++aGF + pls +a++qa+lllr +
  Sevir.4G229000.1.p 356 PQRAAVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEASLGPAGGR---WWRGLERWGAAARAAGFAARPLSAFAVSQARLLLRLH 443
                         **********************************************99987...7899********************************* PP

                GRAS 345 k.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         + s+gy v+e +g+ +lgW++rpL+svS+W+
  Sevir.4G229000.1.p 444 YpSEGYLVQEARGACFLGWQTRPLLSVSSWQ 474
                         ******************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.08765453IPR005202Transcription factor GRAS
PfamPF035149.2E-9192474IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MHALLLLLHP LMLLACHHRR LRPPPPPLIR GLAPVKKKLQ RGGTVGAMLG SLHHHHHHHH  60
SSSSSDTDNN NDNKNGSNSS GGVLAAAAPS ARDLVLACAD LLQRGDLPAA RRAAGVLLSA  120
ASPRADAADR LAYHFARALA LRADARAAAA AGRVAPGLVS AAARPASSGA YLAFNQIAPF  180
LRFAHLTANQ AILDAVEGAR RIHILDLDAA HGVQWPPLLQ AIAERADPAA GPPEVRITGA  240
GADRDTLLRT GSRLRAFARS IQLPFHFTPL LLSCAATHHH EVAGGSATTA SSAATSLELH  300
PDETLAVNCV MFLHKLGGQD EVAAFLKWVK AMAPAVVTVA EREMIGGGYD RIDDLPQRAA  360
VAMDHYSAVF EALEATVPPG SRERLAVEQE VLGREIEASL GPAGGRWWRG LERWGAAARA  420
AGFAARPLSA FAVSQARLLL RLHYPSEGYL VQEARGACFL GWQTRPLLSV SSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-4911947431375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G229000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8765580.0KP876558.1 Saccharum hybrid cultivar ROC22 monoculm 1 (MOC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965904.20.0protein MONOCULM 1
RefseqXP_012700859.10.0protein MONOCULM 1
SwissprotQ84MM90.0MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A368QWS30.0A0A368QWS3_SETIT; Uncharacterized protein
STRINGSi008068m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-71GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]