PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G273300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 490aa    MW: 53177.7 Da    PI: 6.9255
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G273300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS259.41.3e-79934822374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 
                         +el+ +c++a+++g+ + ++a L  +s+l  a+ +gdp+qR+a+ f+eAL +r ++ + ++l+  l  +  ++   + + aa++ f  ++P
  Sevir.3G273300.1.p  93 RELMQHCVTALDAGNIAVVNADLLAMSHLalAACNGDPTQRVAFAFAEALGRRALQsTLPGLSWGLGLQLVQQPAPQYADAARRCFDALCP 183
                         678899**********************988999*****************998885889999998777777667777778999******* PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         +l+++  +aNq+I+ a++ e++vH++D++ + + QW+ Ll+ ++ +Rpeg+p lR+ +v++    ++  l++t+  L++ A +l+vpf fn
  Sevir.3G273300.1.p 184 FLRVAASAANQTIVTAMAAEKHVHVVDLGGTSPNQWLDLLRLFTaARPEGAPVLRLSVVSE----QEAFLSRTAGLLTQEAVRLHVPFIFN 270
                         *******************************************779***************....99************************ PP

                GRAS 180 vl..vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles........erdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                         ++  + +r+++ ++ +L v+ gEal++ + lqlhrl ++++s++         + d++L+++ +lsPk++ ++eqeadhn++s+ +r+++a
  Sevir.3G273300.1.p 271 PVrsHIDRFSAPDIAALGVHLGEALVITSTLQLHRLIADETSVQLpagphqmtKADALLRVLCDLSPKLMLLTEQEADHNGASLWDRVSNA 361
                         *98888899999*************************6655544333444444599*********************************** PP

                GRAS 261 leyysalfdsleak..lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka.akqaklllrkvksdg 348
                         ++yy+alf+ lea+  +pres +r+ vEr ll++ei+++va  g++rrerhe++++W +r++ aGFkp+p+ +++  ++a l   + + dg
  Sevir.3G273300.1.p 362 FNYYVALFNDLEAGggAPRESVDRAAVERLLLREEIMDIVARDGSSRRERHESMKRWAQRMGVAGFKPAPVMSYNqFEDAGLQALQLAADG 452
                         ***********665449*****************************************************866550555555544555677 PP

                GRAS 349 ...yrveeesgslv.lgWkdrpLvsvSaWr 374
                            y v +e++s++ ++ +  p++sv+aWr
  Sevir.3G273300.1.p 453 tlrYWVRNEDASIIsIYSRMTPIFSVTAWR 482
                         78899999999999899999*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.75366457IPR005202Transcription factor GRAS
PfamPF035144.3E-7793482IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSLMNSSNNG KAVVKDEVSS SMAMEGVTRT TFQPVTLENN AHHQAPLDSS GRDDKIKGQG  60
HIGSSTHEVE PSSLAPSMPE PAMTAWKKPL GFRELMQHCV TALDAGNIAV VNADLLAMSH  120
LALAACNGDP TQRVAFAFAE ALGRRALQST LPGLSWGLGL QLVQQPAPQY ADAARRCFDA  180
LCPFLRVAAS AANQTIVTAM AAEKHVHVVD LGGTSPNQWL DLLRLFTAAR PEGAPVLRLS  240
VVSEQEAFLS RTAGLLTQEA VRLHVPFIFN PVRSHIDRFS APDIAALGVH LGEALVITST  300
LQLHRLIADE TSVQLPAGPH QMTKADALLR VLCDLSPKLM LLTEQEADHN GASLWDRVSN  360
AFNYYVALFN DLEAGGGAPR ESVDRAAVER LLLREEIMDI VARDGSSRRE RHESMKRWAQ  420
RMGVAGFKPA PVMSYNQFED AGLQALQLAA DGTLRYWVRN EDASIISIYS RMTPIFSVTA  480
WRPAKKNGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3412848237375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G273300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806761.11e-175scarecrow-like protein 3
TrEMBLK3ZDF10.0K3ZDF1_SETIT; Uncharacterized protein
STRINGSi024587m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-68scarecrow-like 3