PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G398400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 549aa    MW: 57460 Da    PI: 7.0748
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G398400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS196.22e-601535352374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl..f 84 
                         ++lL  cA a+++g+l +aq+lL  lselas +g+p++Rlaa+ +++La rl    ++  +++l++ + +         + +l+  +l  f
  Sevir.2G398400.1.p 153 EQLLNPCAVAIEAGNLPRAQHLLYVLSELASFSGEPNHRLAAHGLRGLALRLPAaVGQAAAATLKMPPCECPApafpgADPRLFRASLirF 243
                         689*************************************************99444444444444333333345676444554444479* PP

                GRAS  85 sevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetg 162
                         +evsP++ + + +aN aI +a++        +rvH++D ++s+G+QWp+Ll+aL+  p  + pps+R+ + g++++      s+       
  Sevir.2G398400.1.p 244 NEVSPWFAVPNALANAAIAQAASARgaaaepRRVHVVDVGVSHGVQWPTLLEALTRVPrgSTPPSVRLAVAGHAATPpapfsSSPPGYDCS 334
                         *********************98877788889***********************76644889*********977768999999999**** PP

                GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nses 252
                          +L ++A+++++++ +    a +l++l  + + + pgE+l+V+l+++l +        ++e+ +vL+ +++l+P++++++e e+   +++s
  Sevir.2G398400.1.p 335 LQLLRYAKTINLDLTIVQ--APSLDTL--HGI-LTPGETLVVCLQFRLGHAA------TDEQAAVLRNIRTLNPELLILAELECGSrSDSS 414
                         ***********9998875..4556665..455.799***********99997......333578*******************99989999 PP

                GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                          + +f+  le  ++++ds++a +    + r + Er++++ e+  ++a+  ++  +     e Wr+rl +aGF++++++ +a+++ak+llrk
  Sevir.2G398400.1.p 415 AAIEFAARLENLWMFLDSTAAAF----KGRDVDERRVMEAEAGTALAATARRGAAVAGGREAWRARLAAAGFEEAAFGGEAVETAKALLRK 501
                         *******************7776....4444455555555566666666666666888999****************************** PP

                GRAS 344 vksdgyrve...eesgslv.lgWkdrpLvsvSaWr 374
                         ++  g+++     + g++v l Wk++p+ ++S Wr
  Sevir.2G398400.1.p 502 YD-SGWELVppsPSAGAAVgLRWKGQPVSFCSLWR 535
                         **.77888855555778888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.625126512IPR005202Transcription factor GRAS
PfamPF035146.8E-58153535IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MSNERDGQEP AAATSSSASD WLDESIAFLA ADLDLGLDAY GWMQASAEAE RQGFHSMVTE  60
TLPPPATTLP QSGLGPVSTS VAPSPVASPQ EFGQPRKRKS PQHSSQRCPV GGGGGRGGPE  120
LDRGGTSCSR KPSKKGSARA GDASLDRDAR WAEQLLNPCA VAIEAGNLPR AQHLLYVLSE  180
LASFSGEPNH RLAAHGLRGL ALRLPAAVGQ AAAATLKMPP CECPAPAFPG ADPRLFRASL  240
IRFNEVSPWF AVPNALANAA IAQAASARGA AAEPRRVHVV DVGVSHGVQW PTLLEALTRV  300
PRGSTPPSVR LAVAGHAATP PAPFSSSPPG YDCSLQLLRY AKTINLDLTI VQAPSLDTLH  360
GILTPGETLV VCLQFRLGHA ATDEQAAVLR NIRTLNPELL ILAELECGSR SDSSAAIEFA  420
ARLENLWMFL DSTAAAFKGR DVDERRVMEA EAGTALAATA RRGAAVAGGR EAWRARLAAA  480
GFEEAAFGGE AVETAKALLR KYDSGWELVP PSPSAGAAVG LRWKGQPVSF CSLWRPAQAG  540
PEPMWHGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-2614853783475Protein SHORT-ROOT
5b3h_B3e-2614853629420Protein SHORT-ROOT
5b3h_E3e-2614853629420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G398400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959825.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A368Q7H60.0A0A368Q7H6_SETIT; Uncharacterized protein
STRINGSi033320m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-50GRAS family protein