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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.2G385000.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
GRAS |
| Protein Properties |
Length: 458aa MW: 49456.4 Da PI: 5.265 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G385000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 303.2 | 6.2e-93 | 61 | 454 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl..fsevs 88
++lL++cA+a++++d++l+q++L+ l+++a pdgd++qRl+a f+ AL ar +r ++ + +a+++ +s ++++++a++l f++++
Sevir.2G385000.1.p 61 EQLLVHCANAIEANDATLTQQILWVLNNIAPPDGDSNQRLTAAFLCALVARASRtgACKAVTAAVAAAVESAALHVHRFTAVELasFVDLT 151
79***************************************************943444555555444444444777777777789***** PP
GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelg 173
P+++f++ +aN aIleaveg vH++ ++ ++++Q p+L++ LasR+egpp lR+T+ + ++++ ++ e+g +L +fA++ +
Sevir.2G385000.1.p 152 PWHRFGYTAANAAILEAVEGFPVVHVVELGTTHCMQIPTLIDMLASRAEGPPILRLTVADVASTTsapppaLDMSYDELGAKLVNFARSRN 242
**********************************************************9988777888887777899************** PP
GRAS 174 vpfefnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.......erdevLklvkslsPkvvvvveqeadhns 250
++++f+v+ ++ +++l++++L + Eal+Vn+++ lh ++de++ + r+ +Lk +++l P++vvvve++ad ++
Sevir.2G385000.1.p 243 MSMDFRVVptspgdaFTSLIDQLRVQQLVSDGTEALVVNCHMLLHAVPDETAGSVMslaqpvsLRTMLLKSLRTLDPNLVVVVEEDADFTA 333
********988888666778888999998888****************8876443334445557889************************ PP
GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
+ + r+ a+++ + +d++++ lp+ se+r+++E+e +g++++nv+a+eg er+er+e ++W +r+++aGF++v+++e+aa ++k++l
Sevir.2G385000.1.p 334 DDVVGRLRAAFNFLWIPYDAVDTFLPKGSEQRRWYEAE-IGWKVENVLAQEGVERVERQEDRARWGQRMRSAGFRAVAFGEEAAGEVKAML 423
**************************************.**************************************************** PP
GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
++++ g+ ++ e++ lvl+Wk++++v++SaW
Sevir.2G385000.1.p 424 NEHA-AGWGMKREDDDLVLTWKGHNVVFASAW 454
****.889999********************* PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 458 aa
Download sequence Send
to blast |
MMQFTHTAPP PPPLHPNGHG GLGLGLFLDV GAPRARPWPG SFPTPASKIS LGNLNSTSCM 60
EQLLVHCANA IEANDATLTQ QILWVLNNIA PPDGDSNQRL TAAFLCALVA RASRTGACKA 120
VTAAVAAAVE SAALHVHRFT AVELASFVDL TPWHRFGYTA ANAAILEAVE GFPVVHVVEL 180
GTTHCMQIPT LIDMLASRAE GPPILRLTVA DVASTTSAPP PALDMSYDEL GAKLVNFARS 240
RNMSMDFRVV PTSPGDAFTS LIDQLRVQQL VSDGTEALVV NCHMLLHAVP DETAGSVMSL 300
AQPVSLRTML LKSLRTLDPN LVVVVEEDAD FTADDVVGRL RAAFNFLWIP YDAVDTFLPK 360
GSEQRRWYEA EIGWKVENVL AQEGVERVER QEDRARWGQR MRSAGFRAVA FGEEAAGEVK 420
AMLNEHAAGW GMKREDDDLV LTWKGHNVVF ASAWAPS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC243238 | 0.0 | AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence. |
