PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G383300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 595aa    MW: 64111.6 Da    PI: 5.4715
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G383300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.27.3e-971885932374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPil 91 
                          +lLlecA+av+++d +++q+l++ l+elasp+g+  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+ 
  Sevir.2G383300.1.p 188 SQLLLECARAVAARDSQRVQQLMWMLNELASPYGEVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWS 277
                         589************************************************************99888744.44444444446******** PP

                GRAS  92 kfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfA 169
                          f+h++aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA
  Sevir.2G383300.1.p 278 SFGHVAANGAILESFLEAaaaspepQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFA 368
                         *************998776778889999************************889***********988889999999************* PP

                GRAS 170 eelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.... 251
                         + +gvpf+f+++++  +l++l+l++L+++      alaVn+v +l  ++  ++  +  rd++ + +++l P+vv+vve+ead+   +    
  Sevir.2G383300.1.p 369 RLMGVPFSFRAVHHAgDLAELDLDALDLRDggaSTALAVNCVNSLRGVV--PGGARR-RDAFTSSLRRLDPRVVTVVEEEADLvA-Sdpdt 455
                         ***********97767**************888899************9..555555.99**********************954.44899 PP

                GRAS 252 ..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                    Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et+++W +r+++aGF+pv++se+
  Sevir.2G383300.1.p 456 sseeggdseaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSED 545
                         9**********************************************.******************************************* PP

                GRAS 333 aakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                         +a+++++llr++  +g+++ +         + ++l Wk++pLv++SaW+
  Sevir.2G383300.1.p 546 VADDVRSLLRRYR-EGWSMRDAglddsaaGAGVFLAWKEQPLVWASAWK 593
                         ************9.88888844444455355566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.944161567IPR005202Transcription factor GRAS
PfamPF035142.5E-94188593IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDTLFRLVSL QASENEKQQQ QQQQSASYNS RSTTSSGSRS SSHQTNASYN YYYHSNSSGG  60
GGGGGQYYYG QQHQHQQYYL EPYQQEECGN AHHLYMDEDF SSSSSSRQHF HSHGAAVQPP  120
TSSVTTAPTP PLSTSSTAAG AAHALFEAAD LSFPPDLNLD FSSPASSSGG GAASSAAVGG  180
GGSGRWASQL LLECARAVAA RDSQRVQQLM WMLNELASPY GEVEQKLASY FLQGLFARLT  240
ASGPRTLRTL AAASDRNTSF DSTRRTALRF QELSPWSSFG HVAANGAILE SFLEAAAASP  300
EPQRFHILDL SNTFCTQWPT LLEALATRSA DDTPHLSITT VVSAAPSAPT AAVQRVMREI  360
GQRMEKFARL MGVPFSFRAV HHAGDLAELD LDALDLRDGG ASTALAVNCV NSLRGVVPGG  420
ARRRDAFTSS LRRLDPRVVT VVEEEADLVA SDPDTSSEEG GDSEAAFLKV FGEGLRFFSA  480
YMDSLEESFP KTSNERLALE RGAGRAIVDL VSCPASESME RRETAASWAR RMRSAGFSPV  540
AFSEDVADDV RSLLRRYREG WSMRDAGLDD SAAGAGVFLA WKEQPLVWAS AWKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-16118359429420Protein SHORT-ROOT
5b3h_E1e-16118359429420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G383300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673280.0BT067328.1 Zea mays full-length cDNA clone ZM_BFc0012E13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958171.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLK3ZRR60.0K3ZRR6_SETIT; Uncharacterized protein
STRINGSi029296m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-145GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]