PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G367700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 458aa    MW: 49153.9 Da    PI: 6.5127
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G367700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.53.6e-112684372374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeav+ ++l++a++lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +++ a++ ++ +sP++k
  Sevir.2G367700.1.p  68 LSLLLRCAEAVAMDQLTEARELLPEIGELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRVAGAFQSYNALSPLVK 158
                         689**************************************************************************************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.. 181
                         fsh+taNqaIl+a++ge+r+H+iD+di+qGlQWp L++ LasRp++p s+RiTg+g+    s + le+tg+rLa+fA++lg+pfef+++  
  Sevir.2G367700.1.p 159 FSHFTANQAILQALDGEDRLHVIDLDIMQGLQWPGLFHILASRPRKPRSIRITGLGA----SLDVLEATGRRLADFATSLGLPFEFHPIeg 245
                         *********************************************************....9***************************99 PP

                GRAS 182 ....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                             va++ + l +++ + +++Ea++V++++  h l+d ++s       +++l+++l+Pk++++veq++ h s++Fl rf+eal+yysalf
  Sevir.2G367700.1.p 246 kighVADAAALLGPRHHHHQQDEATVVHWMH--HCLYDVTGSDVG----TVRLLRTLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALF 329
                         888777888888999999999*********9..889988999998....**********************.899**************** PP

                GRAS 269 dsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                         d+l  ++++++    er+ vEr+llg ei+n+va  g +r+ + + +e+W++ l++aGF+pv+l  + a+qa+lll +++++gy++ ee++
  Sevir.2G367700.1.p 330 DALGDGAGAAEeeaAERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWSDELRRAGFRPVSLAGSPATQARLLLGMYPWKGYTLVEEDA 419
                         ***5443333323699***********************998887.9******************************************** PP

                GRAS 357 slvlgWkdrpLvsvSaWr 374
                         +l lgWkd +L+++SaW+
  Sevir.2G367700.1.p 420 CLKLGWKDLSLLTASAWE 437
                         *****************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.93741417IPR005202Transcription factor GRAS
PfamPF035141.3E-10968437IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MLQGVLSRAP ATDAAAAAAM KAKRAPVSPD EKGDGDGCPA RGKRQQLLGL GPAAAAEEGP  60
ETRGLRLLSL LLRCAEAVAM DQLTEARELL PEIGELASPF GSSPERVAAY FGDALCARVL  120
SSYLGAYSPL ALRPLAAAQS RRVAGAFQSY NALSPLVKFS HFTANQAILQ ALDGEDRLHV  180
IDLDIMQGLQ WPGLFHILAS RPRKPRSIRI TGLGASLDVL EATGRRLADF ATSLGLPFEF  240
HPIEGKIGHV ADAAALLGPR HHHHQQDEAT VVHWMHHCLY DVTGSDVGTV RLLRTLRPKL  300
ITIVEQDLGH SGDFLGRFVE ALHYYSALFD ALGDGAGAAE EEAAERHAVE RQLLGAEIRN  360
IVAVGGPKRT GEVRVERWSD ELRRAGFRPV SLAGSPATQA RLLLGMYPWK GYTLVEEDAC  420
LKLGWKDLSL LTASAWEPAD DDTVAAAPTP RHGSQET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1567343824379Protein SCARECROW
5b3h_D1e-1567343824379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G367700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269610.0KJ726961.1 Zea mays clone pUT3661 GRAS transcription factor (GRAS54) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958062.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-174SCL23_ARATH; Scarecrow-like protein 23
TrEMBLK4A1090.0K4A109_SETIT; Uncharacterized protein
STRINGSi032551m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-157GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]