PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G275500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 276aa    MW: 27978.8 Da    PI: 5.9715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G275500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.4e-1689137356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g+
  Sevir.1G275500.1.p  89 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRGA 137
                         9***9.55.6*********94....36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.6E-2688150IPR001471AP2/ERF domain
PROSITE profilePS5103220.17888144IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-1888144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-2689144IPR001471AP2/ERF domain
CDDcd000182.49E-1789144No hitNo description
PfamPF008474.8E-989136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAEQQPPPPS SSSPPAPHSP SPTVQVQAGL PASHQASGSG PASPHSPSPV ASDGTATAAA  60
GVVATAPAMA TATSSGEPSP RSSGKHAFYR GIRCRSGKWV SEIREPRKAR RIWLGTYPTA  120
EMAAAAYDVA ARALRGADAV LNFPGAIASR QAPASASPAD IRAAAAAAAA AAQLEHPQGG  180
EAAATANPPA AAQDRHHQHH GMSSATADAA GGYTPQQGID SGEFMDEEAI FEMPQLLRNM  240
AAGMMMSPPR LSPDTSDESP DPSEAGESLW SYHDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13851441172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G275500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277030.0KJ727703.1 Zea mays clone pUT5642 AP2-EREBP transcription factor (EREB127) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953436.11e-139ethylene-responsive transcription factor ERF027
SwissprotQ9FJ908e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A368PRZ00.0A0A368PRZ0_SETIT; Uncharacterized protein
STRINGSi018039m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-29ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]