PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G267700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 709aa    MW: 73721.7 Da    PI: 6.1161
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G267700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.85.3e-843507073374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y++eAL   la+      +  +++ ts+ +++ +laa+k fs++sP+l+f
  Sevir.1G267700.1.p 350 DELAAAAKAAEAGNSVGAREILARLNHQLPPLGKPFLRSASYLKEALLLALAE-----GHHGACRLTSPLDVALKLAAYKSFSDLSPVLQF 435
                         7899*************************************************.....6777889999999******************** PP

                GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                         +++ta qa+l++++g+   ++H+iDfd++ G+QW+++lq+La R+    +  p +++T+++s +s++  el+ t++++a+fA+ lg+pfef
  Sevir.1G267700.1.p 436 TNFTATQALLDEIAGStaACIHVIDFDLGVGGQWASFLQELAHRRgaggAALPFVKLTAFVSTASHHPLELRLTRDNIAQFAADLGIPFEF 526
                         ***************988899***********************977555589************************************** PP

                GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                         n++   + +++++ eL   + +E++aV l +          +     +++L+lvk+l Pk+v+ +++  d+ + +F ++fl++++ ++ l+
  Sevir.1G267700.1.p 527 NAV---SADTINPAELISTTgDEVVAVVLPVGCSARA---PP----LPAILRLVKQLGPKIVIAIDHGGDRADLPFSQHFLNCFQSCVFLL 607
                         **8...7788999888666569*******99776665...44....556****************************************** PP

                GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                         dsl+a  + + + + k+E++l++++i+++v  +g++      + + Wr+++ + GF pvp s+ a +qa++ll++v+++g++ve+    l+
  Sevir.1G267700.1.p 608 DSLDAA-GIDPDSAFKIEKFLIQPRIEDMVLGRGKA-----DKPMAWRSAFAAGGFAPVPPSNLADAQADCLLKRVQVRGFHVEKCGVGLT 692
                         ***888.788899*********************99.....88999********************************************* PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         l+W++ +Lv+vSaWr
  Sevir.1G267700.1.p 693 LYWQRGELVTVSAWR 707
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.889322687IPR005202Transcription factor GRAS
PfamPF035141.8E-81350707IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MRAALFGAER SGAADLVGGG KVLFWPEGKA RALVEPRSVL DCTLSHSPNN SKSTLSSSLG  60
GGAADSTGVA AVSDSSASAA TEATKWGSPG EHGGGGKEDW AGGCELPPIP AGLDMGLVGG  120
DNWDAVLGNA AAAGQDQTFL NWIIGAAGDL DQPGPPLPVH QQPLLDNAGF GFPAADPPGF  180
SLDPHLGGVA SDMSSPGAVS HTTNSGGGSK ASSAFGLFST ESASLQPPPP PVLFHEGIDT  240
KPPLLGAQPP GPLLHQFQHQ PPPTTTFFMP LPSFPNHNQQ SPLLQPPPKR HQSMGDDLYL  300
ARNRAAAAAQ GLPFPPLHGP APFQLQPSPP PPHGAMKTTA AEAAQQQLLD ELAAAAKAAE  360
AGNSVGAREI LARLNHQLPP LGKPFLRSAS YLKEALLLAL AEGHHGACRL TSPLDVALKL  420
AAYKSFSDLS PVLQFTNFTA TQALLDEIAG STAACIHVID FDLGVGGQWA SFLQELAHRR  480
GAGGAALPFV KLTAFVSTAS HHPLELRLTR DNIAQFAADL GIPFEFNAVS ADTINPAELI  540
STTGDEVVAV VLPVGCSARA PPLPAILRLV KQLGPKIVIA IDHGGDRADL PFSQHFLNCF  600
QSCVFLLDSL DAAGIDPDSA FKIEKFLIQP RIEDMVLGRG KADKPMAWRS AFAAGGFAPV  660
PPSNLADAQA DCLLKRVQVR GFHVEKCGVG LTLYWQRGEL VTVSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2242370780375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G267700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635040.0BT063504.1 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682654.10.0scarecrow-like protein 27
TrEMBLA0A368PPT90.0A0A368PPT9_SETIT; Uncharacterized protein
STRINGSi016508m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-81GRAS family protein