PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G232600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 337aa    MW: 35282.3 Da    PI: 4.8692
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G232600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.1e-072865438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                        r C+ +  ++++l+C+ ++ +lC+ C    H g    H 
  Sevir.1G232600.1.p 28 RPCDACAAEPARLHCRADGAFLCPGCDARAH-GagsrHA 65
                        68**************************999.4466675 PP
2zf-B_box24.55.8e-0867112342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          + C+ +e+ ++   C+ +   lC+ C   +H+       H++vp+
  Sevir.1G232600.1.p  67 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERVPV 112
                         679*****************************66899999999986 PP
3CCT70.25e-24258300143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k+
  Sevir.1G232600.1.p 258 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKR 300
                         9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.2E-52569IPR000315B-box-type zinc finger
PROSITE profilePS501199.6842569IPR000315B-box-type zinc finger
PfamPF006438.3E-62865IPR000315B-box-type zinc finger
CDDcd000215.75E-72869No hitNo description
PROSITE profilePS5011910.50965112IPR000315B-box-type zinc finger
PfamPF006433.2E-667112IPR000315B-box-type zinc finger
SMARTSM003361.2E-970112IPR000315B-box-type zinc finger
PfamPF062033.0E-18258300IPR010402CCT domain
PROSITE profilePS5101716.916258300IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDAAAELELE LELEQKPAVG YWGVVGARPC DACAAEPARL HCRADGAFLC PGCDARAHGA  60
GSRHARVWLC EVCEHAPAAV TCRADAAALC AACDADIHSA NPLARRHERV PVAPFFGALA  120
DAPQPFPSPA FAAAAAAGAH AQGEVGADDD GSNEAEAASW LLPEPDNSHE DSAAATDAFF  180
ADSDGYLGVD LDFARSMDGI KAIGVPVAPP ELDIAAGGFF YPDHSMNHSV SSSEVAVVPD  240
ALAAGGPAVP VVSRGKEREA RLMRYREKRK NRRFDKTIRY ASRKAYAETR PRIKGRFAKR  300
CSAEAEDEAL EHEEGACFSP AVSAPAASDG VVPSFC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G232600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9562390.0EU956239.1 Zea mays clone 1559496 CONSTANS-like protein CO5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953058.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A368PN810.0A0A368PN81_SETIT; Uncharacterized protein
STRINGSb04g025660.11e-180(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.12e-39CONSTANS-like 3