PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G064400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 387aa    MW: 39518.2 Da    PI: 6.5872
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G064400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.27.2e-0855100342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          ++C+ +e+ ++   C+ +   lC+ C   +H        H++vp+
  Sevir.1G064400.1.p  55 VWVCEVCERAPAAVTCRADAAALCAACDADIHDAnplarrHERVPV 100
                         689*****************************44788888999986 PP
2CCT713e-24290333144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+l+RY+eKrk+R+FeK+irY+sRKa+AesRpRvKGrF+k+a
  Sevir.1G064400.1.p 290 REARLMRYREKRKNRRFEKTIRYASRKAYAESRPRVKGRFAKRA 333
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.00411257IPR000315B-box-type zinc finger
PROSITE profilePS5011910.86553100IPR000315B-box-type zinc finger
PfamPF006438.5E-654100IPR000315B-box-type zinc finger
SMARTSM003367.9E-958100IPR000315B-box-type zinc finger
PfamPF062036.1E-18290332IPR010402CCT domain
PROSITE profilePS5101716.986290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEVGLAARYW GVGGRRCGAC GGSPAAVHCR TCSGGGAYLC AGCDAEHAVA GHERVWVCEV  60
CERAPAAVTC RADAAALCAA CDADIHDANP LARRHERVPV QPIGAAAAPH AADPMLFVAA  120
AAVGEKDDDA AAAGMLGGAA KVDAKQLEFL FAEVMDPFLG QEEFARFPHA DSIVPNNGSS  180
GGALDLDFGG AVAAGAAKPS YSSYTAASVA HSGSSSEVGL VPDAICGRGG SVTGGVIELD  240
FAQSKAAYLP YAATPTHSVS SLNVGAVPER GDGGVMAGRV AAATAAGESR EARLMRYREK  300
RKNRRFEKTI RYASRKAYAE SRPRVKGRFA KRADDNDADA AAADDFVTSS TAAAPPPPPQ  360
QQPAAYPSYV LNFSPAAAGY GVVPTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G064400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3672192e-63AK367219.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2053C02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951711.10.0zinc finger protein CONSTANS-LIKE 5
TrEMBLK3YT920.0K3YT92_SETIT; Uncharacterized protein
STRINGSi017487m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.18e-30CONSTANS-like 5