PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052126
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 486aa    MW: 53111.8 Da    PI: 5.2428
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052126genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3421e-1041174843373
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           + ++e+A+a+++g+++ a ++L+rl + a  +g++ qRl+ay++ AL++r+++    +    p+ e    +s+e++ +++ ++e+sP++
  PGSC0003DMP400052126 117 QSIVEAATAITDGKTNVAVQILTRLAQVADVRGSSEQRLTAYMVSALRSRVNS----TEYPPPVME---LHSKEHAVSTQNLYEISPCF 198
                           6789************************************************9....222233333...458999999999******** PP

                  GRAS  92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpf 176
                           k+++++aN aI+eav+ +  + +H+iDfdi+qG+Q++ Ll+aLa+++ + p sl+iT++  + +g    +++++++ L+ +A+++g+++
  PGSC0003DMP400052126 199 KLGFMAANLAIVEAVADHpsNIIHVIDFDIGQGGQYLHLLHALATKNTDYPiSLKITAITTEFTGrADSRVNSIEDDLKTLANKVGISL 287
                           *****************998899************************88777*********88888999******************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                            fn+ ++ +++dl+ e+L ++++EalaVn++++l+rl+desv++e+ rde+L+ vk+lsPkvv++veqe++ n++ F++r+ ea+ yy 
  PGSC0003DMP400052126 288 IFNI-ISCSITDLSREKLGIEHDEALAVNFAYRLYRLPDESVTTENLRDELLRRVKGLSPKVVTLVEQELNGNTAAFVARVNEACGYYG 375
                           ***9.6889******************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve 352
                           al+dsl+a++++++  r+k+E+  l+r+++n vaceg++r+er+e ++kWr+r+++aGF+p p+s+++a++    l+  +  + g++v+
  PGSC0003DMP400052126 376 ALLDSLDATVSKDETGRVKIEEG-LSRKLTNSVACEGRDRVERCEVFGKWRARMSMAGFGPRPMSQQIADSLLKRLNSGPrgNPGFNVN 463
                           ***********************.*******************************************999987777766557899**** PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                           e+sg + +gW++++L+++SaW
  PGSC0003DMP400052126 464 EQSGGIRFGWMGKTLTVASAW 484
                           ********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.59489463IPR005202Transcription factor GRAS
PfamPF035143.6E-102117484IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MTARHPLPIS TANTNGVLSS GNPDCSAVAS YLNQVQNSLY QESEEKMMNR LHELEKQLLE  60
DNNEEEEDTV SVVTNNDEWS ETIKNLITPI SNHLSPASST SSCSSSMESP PVSSPKQSIV  120
EAATAITDGK TNVAVQILTR LAQVADVRGS SEQRLTAYMV SALRSRVNST EYPPPVMELH  180
SKEHAVSTQN LYEISPCFKL GFMAANLAIV EAVADHPSNI IHVIDFDIGQ GGQYLHLLHA  240
LATKNTDYPI SLKITAITTE FTGRADSRVN SIEDDLKTLA NKVGISLIFN IISCSITDLS  300
REKLGIEHDE ALAVNFAYRL YRLPDESVTT ENLRDELLRR VKGLSPKVVT LVEQELNGNT  360
AAFVARVNEA CGYYGALLDS LDATVSKDET GRVKIEEGLS RKLTNSVACE GRDRVERCEV  420
FGKWRARMSM AGFGPRPMSQ QIADSLLKRL NSGPRGNPGF NVNEQSGGIR FGWMGKTLTV  480
ASAWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4114248424374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052126
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363331.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-144SCL8_ARATH; Scarecrow-like protein 8
TrEMBLM1CXL90.0M1CXL9_SOLTU; Uncharacterized protein
TrEMBLM1CXM00.0M1CXM0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000769320.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-140SCARECROW-like 8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]