PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047011
Common NameLOC102581071
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 604aa    MW: 67135 Da    PI: 4.933
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047011genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.52e-12259281426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           + C ++++tGtC+yG +CkF+H+
  PGSC0003DMP400047011 259 VDCAYYMKTGTCQYGLNCKFNHP 281
                           68********************8 PP
2zf-CCCH29.51.3e-09307329527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           +C++++ +G CkyG+ Ck++H++
  PGSC0003DMP400047011 307 ECKYYLTGGGCKYGNACKYSHSK 329
                           6********************95 PP
3zf-CCCH40.16.3e-13350374226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           +++ C+f++rtG CkyG++C+F+H+
  PGSC0003DMP400047011 350 GEKDCPFYMRTGSCKYGSNCRFHHP 374
                           6789********************9 PP
4zf-CCCH26.98.5e-09486512127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++ C++f +tG Cky + CkF+H++
  PGSC0003DMP400047011 486 PGQPDCSYFIKTGDCKYKSDCKFHHPK 512
                           5789*********************96 PP
5zf-CCCH37.93.1e-12534559227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++ C+f++r+G+CkyG+ CkF H++
  PGSC0003DMP400047011 534 GQAVCSFYSRYGICKYGPACKFDHPE 559
                           7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.76255283IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5255282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6257285IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10259281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4261280IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882302330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5307329IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7307329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5308329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.502348376IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7348375IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10350374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6350376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5354373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666485513IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-4485512IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-5487512IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-5490513IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5530557IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112532560IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7532559IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9534559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4537560IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEAIQSLYMH NLNQPTLDKQ YLGFDPQPPE AASFSSEPNL QNPSRDLPKA EENDVDDDDE  60
MLLRIIFEEL QNLVLNQAFS EERTKGGVYE SIKAKSESED EKDVQMIVEE LKNLVVNQAF  120
SEERAKGDIH EGNGRDEVGN EYGGNHYEDG AGWSENENVI DVKNEKGGEV VSREWGFDHY  180
EDGDYSWSES GIVVDVENEK GGEVGSKEWG FDHYEDGDLS WSGNGIDVTN ENGSKAGSKE  240
WGFNANGRRL NYPLRPDAVD CAYYMKTGTC QYGLNCKFNH PSRRQNQWAM EKGKQRDESE  300
ERAGLIECKY YLTGGGCKYG NACKYSHSKR NGAISPVLDF NFLGLPIRQG EKDCPFYMRT  360
GSCKYGSNCR FHHPDPTTMT GNNPSLGYNN GGSAPVQSAS YSPVSSWSSP RASNETAPFV  420
PVVYPANQGI LPLSPEWNRF QAPVYQTSEK SLPTPPAFTM KDPATKTNIY SRPQPPWLVE  480
EYPERPGQPD CSYFIKTGDC KYKSDCKFHH PKTQKSLTNP PSVLSDKGLP LRPGQAVCSF  540
YSRYGICKYG PACKFDHPEH IDNPAPSPAP AFYQPPFGIS SASDGLRMAR KGNGSGSLVH  600
QSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347414.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ5RJC51e-104C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLM1CKS70.0M1CKS7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000696260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-104C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]