PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046283
Common NameLOC102600410
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 509aa    MW: 58731.2 Da    PI: 4.9477
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046283genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS152.73.4e-471405073373
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL    ea+++g++ela+ ++  ++   +p g++++R+a+ + +    +  +      ++ +  ++++++ +e  aa+k+f++++P+ 
  PGSC0003DMP400046283 140 HLLSVYGEAMENGHKELAEVIIRSIKGKINPLGESLERVASNLFQ----QTEE------DQGSYLRQESNKIIE--AAFKAFYQIFPLG 216
                           677777899******************************986544....3333......222222333233444..5899********* PP

                  GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpf 176
                           kf+hl+aN aI ea+  + +++Hi+D+d+++G+QWp++++a++++      lR+T +++  ++   ++ + eet++rL ++A+ +g+++
  PGSC0003DMP400046283 217 KFAHLVANLAIIEAMPDDaQTIHIVDYDMGKGIQWPPIIEAMSQK---RKILRLTSIKKTGEEsisDHWRFEETKRRLLDYANPFGLTL 302
                           ***************88879***********************97...457******997766888999******************** PP

                  GRAS 177 efnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnse.....sFl 254
                           + + ++ +   ++l+  + r k+ E l+ n+++q  ++ ++   +e        +e+L +  s+   +v++ + ea  ns+     +F 
  PGSC0003DMP400046283 303 QVEEMTFEeLASELRRMKKRGKRSEWLVFNCMFQFLHMGKRMRRIEAleflkLAKELLLAYSSTHRGLVTFGDGEAMDNSHqntnyTFS 391
                           ***98555133445555556666***************98777777743443455666666677889********988888788889** PP

                  GRAS 255 erflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                             f + l +y  +f+sle  +p++  ++r  +E  +l++++++    ++ e      ++ + ++  +e G++ +++s+++  qak +++
  PGSC0003DMP400046283 392 SYFNKNLIHYQLIFESLELYFPSHLaQARLAMESLFLAPQVCSFSWFQNWE------EMTSVSDSCSEIGLQGMRISKENLLQAKEVVN 474
                           *********************99877***************9987777776......6778899************************* PP

                  GRAS 343 kvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                           + +   ++v    e+++++vl Wk+ ++v vS W
  PGSC0003DMP400046283 475 ERETP-FNVRieeERQHEMVLEWKGISVVRVSTW 507
                           *9944.66554467799***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.25112486IPR005202Transcription factor GRAS
PfamPF035141.2E-44140507IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MIQSEILHNS WSSTNQIHPF YEYQNHGVSN YSSLNSKDQD SSEISFSDFT SLFSDDVLTD  60
LPMDDMEFVD VSRWLNDSES EGNENMKITS ETKKDGDSCS PELSSISIDT STTIQSRNDV  120
VSHVLQGNSR EMDNQMRIHH LLSVYGEAME NGHKELAEVI IRSIKGKINP LGESLERVAS  180
NLFQQTEEDQ GSYLRQESNK IIEAAFKAFY QIFPLGKFAH LVANLAIIEA MPDDAQTIHI  240
VDYDMGKGIQ WPPIIEAMSQ KRKILRLTSI KKTGEESISD HWRFEETKRR LLDYANPFGL  300
TLQVEEMTFE ELASELRRMK KRGKRSEWLV FNCMFQFLHM GKRMRRIEAL EFLKLAKELL  360
LAYSSTHRGL VTFGDGEAMD NSHQNTNYTF SSYFNKNLIH YQLIFESLEL YFPSHLAQAR  420
LAMESLFLAP QVCSFSWFQN WEEMTSVSDS CSEIGLQGMR ISKENLLQAK EVVNERETPF  480
NVRIEEERQH EMVLEWKGIS VVRVSTWM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316324RRMKKRGKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046283
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169942.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLM1CJ590.0M1CJ59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000685070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-22GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]