PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043264
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 439aa    MW: 49386.4 Da    PI: 5.5848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043264genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.81.5e-95554352373
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsP 89 
                           ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r a+   +++k l+++ +++++ ++ ++  l  f++++P
  PGSC0003DMP400043264  55 EQLLVHCANAIDSNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALILRAAK--IGTCKLLTSNLNHSMEtHKFSIIELASFVDLTP 141
                           79***************************************************9..666666655555544426666666677****** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
                           +++f++ +aN aIleaveg + +Hi+Df++++++Q p+L++a+++R egpp +++T+ g+ e        ++ee+g +L +fA++ +v 
  PGSC0003DMP400043264 142 WHRFGFTAANGAILEAVEGYSIIHIVDFSLTHCMQIPTLIDAISTRVEGPPLIKLTVAGATEDLppmLDLSYEELGAKLVNFARSRNVM 230
                           ************************************************************776698888999***************** PP

                  GRAS 176 fefnvl.......vakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhns 250
                           +ef+v+        ++      +e+Lrv++      gEal++n++++lh++++e++ l++  r  +Lk++++l P++vv+v+++ad +s
  PGSC0003DMP400043264 231 MEFRVIpssssdgFSNV-----FEQLRVQNlirpdnGEALVINCHMMLHYIPEETTVLSNsFRAMFLKAIRNLDPTIVVLVDEDADFTS 314
                           *****987644444444.....55555555555567*****************99998886899************************* PP

                  GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                           ++++ r+ +a++y +  +d++++ lpr s++r+++E+  + ++i+nv+a+eg +r er e +++W +r+++a F++  +se+ ++++k 
  PGSC0003DMP400043264 315 NNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVIAQEGIQRLERLEPKSQWVQRMRNANFRSSGFSEEGVTEVKN 402
                           **************************************.************************************************** PP

                  GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                           +l +++  g+ ++ +++ lvl+Wk++++v+++aW
  PGSC0003DMP400043264 403 MLDEHA-AGWGLKRDEEDLVLTWKGHSVVFATAW 435
                           ******.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.61328417IPR005202Transcription factor GRAS
PfamPF035145.3E-9355435IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MQFTESLPPQ VSSFSSLMMN KNSNTNNNQI QHARPWPGFH TSKNLGNIGD TNCMEQLLVH  60
CANAIDSNDA TLAQQILWVL NNIAPPDGDS NQRLTCGFLR ALILRAAKIG TCKLLTSNLN  120
HSMETHKFSI IELASFVDLT PWHRFGFTAA NGAILEAVEG YSIIHIVDFS LTHCMQIPTL  180
IDAISTRVEG PPLIKLTVAG ATEDLPPMLD LSYEELGAKL VNFARSRNVM MEFRVIPSSS  240
SDGFSNVFEQ LRVQNLIRPD NGEALVINCH MMLHYIPEET TVLSNSFRAM FLKAIRNLDP  300
TIVVLVDEDA DFTSNNLVCR LRSAFNYLWI PYDTVDTFLP RGSKQRQWYE ADICWKIENV  360
IAQEGIQRLE RLEPKSQWVQ RMRNANFRSS GFSEEGVTEV KNMLDEHAAG WGLKRDEEDL  420
VLTWKGHSVV FATAWVPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-495543734420Protein SHORT-ROOT
5b3h_E3e-495543734420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043264
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339936.20.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLM1CBW00.0M1CBW0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]