PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037847
Common NameLOC102581902
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 482aa    MW: 54372.4 Da    PI: 6.7652
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037847genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.69.9e-831104784374
                  GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetseknsseelaalkl....fsev 87 
                           lL + Ae++s+++  +a++lL   +  asp+g+p+qR++ yf eAL++r+ ++  +l+ +  + +e+++ + +++l+  k      ++ 
  PGSC0003DMP400037847 110 LLQDSAEMFSKRHYDRATELLRLCNLSASPSGTPVQRVVYYFCEALRKRIDKEKGTLSlNRPEGWEEKPFDLDKVLQNPKPfavvCYQS 198
                           57789**********************************************9444443033355555555555555555443335899* PP

                  GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfA.eelgv 174
                           sP++++ +++  qaI + v++++r+H iDf+++ G +W+ L+qaL +    +   l+iT+v+     sk+++ee+g+rL++fA e+++ 
  PGSC0003DMP400037847 199 SPFFQVPQFAGIQAIIDNVKSAKRIHLIDFGVKIGSHWAVLMQALDNVGdCPFELLKITAVAT----SKQMVEEIGQRLSSFAaENIKF 283
                           *********************************************9865244559********....9**************73579** PP

                  GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                           pf+f++ v+++++dl+ + ++++++E++aV + ++l  +l+ + +les    vL+l+ksl+P v+vv+++ea++n++ F++rf eal  
  PGSC0003DMP400037847 284 PFSFKA-VVSEMKDLSKDLFELDTNEVVAVYSEYSLGGMLAWPNHLES----VLRLIKSLNPCVMVVIDSEANTNAPIFMDRFNEALFL 367
                           ******.7999*****************************77777777....************************************* PP

                  GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr.v 351
                           y a+fd l++ + r+++ r++ E  +l++ i+n+++ceg+er+ r+ +le Wr+ +e++G k+ +l+e+   qa+l+  +++ +g++ +
  PGSC0003DMP400037847 368 YGAFFDYLDVCMERNNHYRMTFEGLILRNIIQNIITCEGNERTFRNVRLEVWRDLFEKFGIKETELGESSLYQANLMADRCG-HGFStL 455
                           **********************************************************************************.776515 PP

                  GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                           + + + l++ Wk+ p++++SaW+
  PGSC0003DMP400037847 456 DMNGKGLLIKWKGSPIIFASAWK 478
                           56666777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.14381458IPR005202Transcription factor GRAS
PfamPF035143.4E-80110478IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDSSLVNKGK DQIQRPRCAE EKKESSCLPS ASCTILQKHY CGGEIREKPH DIPSSNTSGS  60
HAPPTVSIFE MARAQLLQQT SKKEDSSSFT SNTCCGLYPR ALKDFEIALL LQDSAEMFSK  120
RHYDRATELL RLCNLSASPS GTPVQRVVYY FCEALRKRID KEKGTLSLNR PEGWEEKPFD  180
LDKVLQNPKP FAVVCYQSSP FFQVPQFAGI QAIIDNVKSA KRIHLIDFGV KIGSHWAVLM  240
QALDNVGDCP FELLKITAVA TSKQMVEEIG QRLSSFAAEN IKFPFSFKAV VSEMKDLSKD  300
LFELDTNEVV AVYSEYSLGG MLAWPNHLES VLRLIKSLNP CVMVVIDSEA NTNAPIFMDR  360
FNEALFLYGA FFDYLDVCME RNNHYRMTFE GLILRNIIQN IITCEGNERT FRNVRLEVWR  420
DLFEKFGIKE TELGESSLYQ ANLMADRCGH GFSTLDMNGK GLLIKWKGSP IIFASAWKFS  480
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-3313647832375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037847
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169309.10.0PREDICTED: DELLA protein RGL3-like
TrEMBLM1BZ590.0M1BZ59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000562290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1712335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.13e-47RGA-like protein 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]