PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033379
Common NameLOC102604625
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 511aa    MW: 57308.3 Da    PI: 5.3043
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033379genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.62.3e-1101375011373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           lv++L++cAea+++++l+la+ l ++l+      g +m+++a+yf+ AL ++++r        l+p++  e+  s+    +  f+e +P
  PGSC0003DMP400033379 137 LVNALMACAEAIQENNLTLADVLNSQLRRF--TIGGTMKKVATYFAGALYHKIHR--------LNPRDIVESFYSTDQLLHMSFYESCP 215
                           6899*****************999999876..579********************........66666655554444455567****** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           +lkf+h+ aNq Ilea++ ++rvH+iDf+++qGlQWpaLlqaLa Rp+gpp +R+ g++ + ++   ++ l+e+g +La+fAe+++v+f
  PGSC0003DMP400033379 216 LLKFAHFSANQSILEAFADSKRVHVIDFSLNQGLQWPALLQALALRPGGPPAFRLSGISGQPKFheGSDPLREVGFKLAQFAESIRVEF 304
                           **********************************************************9966667899********************* PP

                  GRAS 177 efnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                           ef  +++++l+dle  +L+++p   E++aVn+v++lhrl++ +++ e+    vL+l+k+++Pk+v+++eqea+hn++ +++r+ ea  y
  PGSC0003DMP400033379 305 EFCGFMVHTLADLEAPMLNIRPsnVETVAVNSVFELHRLFSIPGAFEE----VLDLIKQIQPKIVTIAEQEANHNGSCYMNRIKEAWLY 389
                           *********************9999***************66666666....************************************* PP

                  GRAS 264 ysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                           ys++f  l +++  ++++ +  + +++lgre+ n+vaceg++++ rhetl++Wr r+++aGF+ vpl+++++ +a++ll+ +  ++gyr
  PGSC0003DMP400033379 390 YSTMFYVLeNSESTQTNNRDLDMAEQYLGREVYNLVACEGTKQIVRHETLSQWRVRFNSAGFNLVPLGSNTYRNANMLLALFTnEEGYR 478
                           ********5555666779999999999********************************************************9***** PP

                  GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                           vee++g+l+l  ++rpL+++SaW
  PGSC0003DMP400033379 479 VEEKDGCLMLSCHSRPLFTTSAW 501
                           *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.924111481IPR005202Transcription factor GRAS
PfamPF035147.8E-108137501IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MSSREISMDT IMEDEDSFGS NTNAIIYAAS DMSGWTHSLI SDNNIPNSSS STSVNVHHQQ  60
HQISTAAGDD DDSMFVSSSA SSSWFNNNKQ IDDHQEIRIF NVDFRALCNN TSGGSEFRGH  120
LLPDTGRTLN EETSIRLVNA LMACAEAIQE NNLTLADVLN SQLRRFTIGG TMKKVATYFA  180
GALYHKIHRL NPRDIVESFY STDQLLHMSF YESCPLLKFA HFSANQSILE AFADSKRVHV  240
IDFSLNQGLQ WPALLQALAL RPGGPPAFRL SGISGQPKFH EGSDPLREVG FKLAQFAESI  300
RVEFEFCGFM VHTLADLEAP MLNIRPSNVE TVAVNSVFEL HRLFSIPGAF EEVLDLIKQI  360
QPKIVTIAEQ EANHNGSCYM NRIKEAWLYY STMFYVLENS ESTQTNNRDL DMAEQYLGRE  420
VYNLVACEGT KQIVRHETLS QWRVRFNSAG FNLVPLGSNT YRNANMLLAL FTNEEGYRVE  480
EKDGCLMLSC HSRPLFTTSA WCGYVAKSRD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5314450126378Protein SCARECROW
5b3h_A1e-5314450125377Protein SCARECROW
5b3h_D1e-5314450125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033379
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165084.10.0PREDICTED: DELLA protein GAI-like isoform X1
SwissprotQ7Y1B61e-157GAI_SOLLC; DELLA protein GAI
TrEMBLM1BNS10.0M1BNS1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000494480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-129GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]