PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033378
Common NameLOC102604625
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 202aa    MW: 23015.1 Da    PI: 5.3048
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033378genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS179.91.9e-552192183373
                  GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                           +++l+dle  +L+++p   E++aVn+v++lhrl++ +++ e+    vL+l+k+++Pk+v+++eqea+hn++ +++r+ ea  yys++f 
  PGSC0003DMP400033378   2 VHTLADLEAPMLNIRPsnVETVAVNSVFELHRLFSIPGAFEE----VLDLIKQIQPKIVTIAEQEANHNGSCYMNRIKEAWLYYSTMFY 86 
                           5689999*******99989***************66666666....******************************************* PP

                  GRAS 270 sl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                            l +++  ++++ +  + +++lgre+ n+vaceg++++ rhetl++Wr r+++aGF+ vpl+++++ +a++ll+ +  ++gyrvee++g
  PGSC0003DMP400033378  87 VLeNSESTQTNNRDLDMAEQYLGREVYNLVACEGTKQIVRHETLSQWRVRFNSAGFNLVPLGSNTYRNANMLLALFTnEEGYRVEEKDG 175
                           **5555666779999999999********************************************************9*********** PP

                  GRAS 357 slvlgWkdrpLvsvSaW 373
                           +l+l  ++rpL+++SaW
  PGSC0003DMP400033378 176 CLMLSCHSRPLFTTSAW 192
                           ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.2621172IPR005202Transcription factor GRAS
PfamPF035146.4E-532192IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVHTLADLEA PMLNIRPSNV ETVAVNSVFE LHRLFSIPGA FEEVLDLIKQ IQPKIVTIAE  60
QEANHNGSCY MNRIKEAWLY YSTMFYVLEN SESTQTNNRD LDMAEQYLGR EVYNLVACEG  120
TKQIVRHETL SQWRVRFNSA GFNLVPLGSN TYRNANMLLA LFTNEEGYRV EEKDGCLMLS  180
CHSRPLFTTS AWCGYVAKSR D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-211192195378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033378
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331230.0AC233123.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-13b20 map 10, complete sequence.
GenBankAC2402030.0AC240203.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27f6 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165084.11e-148PREDICTED: DELLA protein GAI-like isoform X1
SwissprotQ7Y1B63e-75GAI_SOLLC; DELLA protein GAI
TrEMBLM1BNS01e-150M1BNS0_SOLTU; Uncharacterized protein
TrEMBLM1BNS11e-146M1BNS1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000494481e-147(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.15e-74GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]