PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026613
Common NameLOC102606216
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 519aa    MW: 58326.5 Da    PI: 4.9358
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026613genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-12186207526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C+++++tG Ck+G++CkF+H+
  PGSC0003DMP400026613 186 DCPYYMKTGMCKFGSNCKFNHP 207
                           7********************8 PP
2zf-CCCH31.23.6e-10232256327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           + +C++++ +G CkyG  CkF+H++
  PGSC0003DMP400026613 232 QIECKYYLTSGGCKYGKACKFNHSR 256
                           568********************95 PP
3zf-CCCH41.12.9e-13278301326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           +++C++++rtG CkyG++C+F+H+
  PGSC0003DMP400026613 278 EKECPYYMRTGSCKYGSNCRFHHP 301
                           689********************9 PP
4zf-CCCH26.98.2e-09415438427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            +C++f ++G Cky ++CkF+H++
  PGSC0003DMP400026613 415 LECSYFIKFGDCKYRSNCKFHHPK 438
                           58********************96 PP
5zf-CCCH37.44.2e-12460484327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +  C+f++r+G+CkyG+ CkF H++
  PGSC0003DMP400026613 460 QTVCSFYSRYGICKYGPACKFDHPE 484
                           678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.723181209IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6181208IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6181208IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9186207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5187206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474229257IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4229256IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7233256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5234258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5235257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.995275303IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6275302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7276302IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-11278301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5281300IPR000571Zinc finger, CCCH-type
SMARTSM003560.23411438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549411439IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5415440IPR000571Zinc finger, CCCH-type
PfamPF146080.75417437No hitNo description
PROSITE profilePS5010315.131457485IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6457484IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6458485IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9460484IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4462484IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEAIEQHQNQ NQNQNQNHNQ SSDQTEELGI ESQNSETLLL PSDLNFQNPN QNQPKADESD  60
DDDEMAMQAI CEELKNLVLS QVLDEDGGNQ DLHHLDREES GELKEKLEDE LENVEGNDDG  120
WGYVGEYGYD QYDEDGDENR SGSRNGNEID GENENGYEGD SKEAGFNANR INKRKINYPL  180
RPDAQDCPYY MKTGMCKFGS NCKFNHPSRR RIQQGTKDKG KQREDSQERP GQIECKYYLT  240
SGGCKYGKAC KFNHSREKGA ISPIVEFNFL GLPIRLGEKE CPYYMRTGSC KYGSNCRFHH  300
PDPTTVAGAD LSSGHNNTGA VPVQAASHSS ASSWSPPRSL NDTAPYVPMM YPPTQGTASP  360
NTEWNGYQAP AYPTSEKRLP TPPAFAMNNP AKTNFYPRSQ QPEQVEEYPE RPGQLECSYF  420
IKFGDCKYRS NCKFHHPKSR ISKANSSTLN DKGLPLRPDQ TVCSFYSRYG ICKYGPACKF  480
DHPENYVGSA SPAESGFDQH QQSQMSQGWQ GQHLEVDH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026613
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351453.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-117C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLM1B7Y70.0M1B7Y7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000392290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-113C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]