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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400026216 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
GRAS |
| Protein Properties |
Length: 489aa MW: 53300.3 Da PI: 4.73 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400026216 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 354.6 | 1.5e-108 | 120 | 487 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
+ L+ecA+ + ++ e++ + L rl+e +s++gdpm+R+ +yf+eAL + l++ + ++ + t + +e + ++k+f++++P+
PGSC0003DMP400026216 120 LKSLVECARLAE-SEPENVVKSLIRLRESVSQQGDPMERVGFYFLEALYNGLSS--CQAERTPSIFGT---TPEELTLSYKAFNDACPY 202
578******655.57888888999******************************..222333333333...36788999********** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
kf+hltaNqaIlea+e+++r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s g + +l +tg+rL++fA+ l+++f
PGSC0003DMP400026216 203 SKFAHLTANQAILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSVRISGIPSVVLGnsPAASLLATGNRLRDFAKLLDLNF 291
**********************************************88777*********877788999******************** PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
ef++ + + +++l+ +++r++p+E laVn++lql++llde+ + + L+l ksl+P +v++ e e+++n+ Fl+rf +al+yys
PGSC0003DMP400026216 292 EFEP-ILTPVQELNGSSFRIDPDEILAVNFMLQLYNLLDETNVGVE---TALSLAKSLNPSIVTLGEYEVNLNDVGFLQRFKNALKYYS 376
****.799******************************88776666...9*************************************** PP
GRAS 266 alfdsleaklpreseerikvErellgreivnvvac.egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
++f+sl+ +l r+s er+ vEr +lgr+i +v g rre +e +e+Wre +e aGFkpv+ls++a++qak ll +++ s + +
PGSC0003DMP400026216 377 TVFESLDPSLTRDSPERVQVERLILGRRIAGAVGLdDGGTRRECMEDKEHWRELMEGAGFKPVTLSHYAMSQAKILLWNYNySSSFGLI 465
*********************************7516778*****************************************99999998 PP
GRAS 353 eesgslv.lgWkdrpLvsvSaW 373
++ ++ l Wkd+pL++vS+W
PGSC0003DMP400026216 466 DSAPGFLsLAWKDNPLLTVSSW 487
88777766************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 489 aa
Download sequence Send
to blast |
MESLIGGGDS TGSSNLQSGC EAWQTSSEFT TLYGDPFSSC PNRLSIGSSP PPPPSSDLNG 60
VIFSETQKNL NSLQPQTSPW VAPSSSPPPI VQPVCKESKV VSVDVLPCSS PESFSSKPLL 120
KSLVECARLA ESEPENVVKS LIRLRESVSQ QGDPMERVGF YFLEALYNGL SSCQAERTPS 180
IFGTTPEELT LSYKAFNDAC PYSKFAHLTA NQAILEATEK ATRIHIVDFG IVHGIQWAAF 240
LQALATRSAG KPVSVRISGI PSVVLGNSPA ASLLATGNRL RDFAKLLDLN FEFEPILTPV 300
QELNGSSFRI DPDEILAVNF MLQLYNLLDE TNVGVETALS LAKSLNPSIV TLGEYEVNLN 360
DVGFLQRFKN ALKYYSTVFE SLDPSLTRDS PERVQVERLI LGRRIAGAVG LDDGGTRREC 420
MEDKEHWREL MEGAGFKPVT LSHYAMSQAK ILLWNYNYSS SFGLIDSAPG FLSLAWKDNP 480
LLTVSSWH*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215443 | 0.0 | AC215443.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0010E18, complete sequence. |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
