PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025697
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 345aa    MW: 37493.8 Da    PI: 4.6692
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025697genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.9e-08125186567
                  GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpps 67 
                            ++c ea+++++l+la++l++ l++ a ++   m+++a+ f++AL + + + ++++ ++++ +
  PGSC0003DMP400025697 125 SIACFEAIQQNNLNLADTLVTDLRKFADSQIGDMKKVATDFAQALDQMIIH-GTNIPQSIHQN 186
                           589*********************************************998.66666555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.1E-5125186IPR005202Transcription factor GRAS
PfamPF078872.2E-42192341IPR012416CALMODULIN-BINDING PROTEIN60
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006950Biological Processresponse to stress
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSFREISEDT STENGDSNFS NTDALIFGSA DISGGDTSMI SGPNTASSSS SSYWSVDHHH  60
QQISTAAGGC DDDNELIVSS ASSRILNDDF RAFTSVAGSE LGLRLNTGDA EGVNNETSNM  120
LVQISIACFE AIQQNNLNLA DTLVTDLRKF ADSQIGDMKK VATDFAQALD QMIIHGTNIP  180
QSIHQNPKLR SLKLMFLRKV YVPVFTGKEI KRVGGSTFDV ALVDVNSGEI VDSAPEASVT  240
VEIVVLRGDF GGDGRDNWTS EEFDSNIVRH REDVNKPLFS GTVHIRLNRG IGLIDKINFS  300
HYTNYMKTNV FCLGARVIEC FDGTRLKEAK TEPFTVKDAR VAAM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025697
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170288.10.0PREDICTED: uncharacterized protein LOC107063218 isoform X2
TrEMBLM1B5Y20.0M1B5Y2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000378140.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-11RGA-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]