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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400024800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 131aa MW: 15226.3 Da PI: 6.5074 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 66.1 | 6.8e-21 | 3 | 125 | 246 | 374 |
GRAS 246 adhns.esFlerflealeyysalfdsleakl.preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 +++ns ++F +rf++ +ey ++++ds+++ + +res+ r+++ + e+ +++++ g++ +et+ekW er++++GF ++++ PGSC0003DMP400024800 3 CSCNScGDFTTRFSRRVEYLWKFLDSTSVAYkGRESDGRRMM-----EGEAAKALTNMGEM----NETKEKWCERMRTVGFVWKMFGDD 82 66644269*******************777514444555555.....55689999999998....99********************** PP GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 a + a++ll+k++ ++++rv+e++g++ l Wk+ p+ ++S W+ PGSC0003DMP400024800 83 AIDRARALLKKYDnNWEMRVDEKDGCVGLWWKGDPVSFCSLWK 125 *************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.802 | 1 | 104 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-18 | 3 | 125 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MDCSCNSCGD FTTRFSRRVE YLWKFLDSTS VAYKGRESDG RRMMEGEAAK ALTNMGEMNE 60 TKEKWCERMR TVGFVWKMFG DDAIDRARAL LKKYDNNWEM RVDEKDGCVG LWWKGDPVSF 120 CSLWKIDPNT * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400024800 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361338.1 | 2e-94 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 5e-63 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A3Q7J9R1 | 6e-89 | A0A3Q7J9R1_SOLLC; Uncharacterized protein | ||||
TrEMBL | M1B3V2 | 1e-90 | M1B3V2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400036577 | 2e-91 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 4e-48 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400024800 |
Publications ? help Back to Top | |||
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