PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400021692

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 1008aa MW: 110975 Da PI: 5.9265

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400021692	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	607	658	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PGSC0003DMP400021692 607 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 658 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	595	678	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	610	658	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-23	911	998	No hit	No description
PROSITE profile	PS51745	25.665	912	994	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-26	912	993	No hit	No description
SMART	SM00666	1.3E-24	912	994	IPR000270	PB1 domain
CDD	cd06407	1.35E-38	913	993	No hit	No description
Pfam	PF00564	4.3E-19	913	993	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
MNFIFRSKPK EFAPPPPAPA TALQQQQHAA GENHRESLMM DLDLDLDASW SFDQIFAAAA 60 SASNPMSPFL VPAASEQPCS PLWAFSDENE DKPNGNALSS GSLRLSNYPR FVTYANEHEA 120 APETVSVTDD KKRIPLPIKG LAPLDYLDSS CIIKERMTQA LRYFKESTGE RVLAQIWAPV 180 KNGGRYVLTT SGQPFVLDPD CNGLHQYRMV SLMYMFSVDG ETDGVLGLPG RVYRKKLPEW 240 TPNVQYYSSK EFPRLNHALD YNVRGTLALP VFEPSGQSCV GVLELIMTSQ KINYAPEVDK 300 VCKALEAVNL KSSEILDYPN HQICNEGRQN ALVEILEILT AVCETYKLPL AQTWVPCRHR 360 SVLADGGGFK KSCSSFDGSC MGQVCMSTTD VAFYVVDAHM WGFREACAEH HLQKGQGVAG 420 RAYASQKSCF CEDIGQFCKT EYPLVHYARL FGLSSCLAIC LRSTHTGNDD YILEFFLPPN 480 DGDYTDQLAL LNSLLLTMKQ HFRSLRVASG EELEHNWGSV EIIKASTEEK LGSRFDSVPT 540 TKSLPQSASV ANGRTHPDLM EEQQSPVALN VAKGAEGVNG TAEAHNHASV PENKQTGKKS 600 ERKRGKAEKT ISLEVLQQYF AGSLKDAAKS LGVCPTTMKR ICRQHGISRW PSRKINKVNR 660 SLSKLKRVIE SVQGADGTFS LTSLAPNSLP VAVGSISWPA GINGSPCKAS EYQEEKNEFS 720 NHGTPGSHEE AEPMDQMLGS RIIGNEELSP KQNGFVREGS HRSRTGSFSR EESTGTPTSH 780 GSCQGSPSPA NESSPQNELV NSPTQESVMK VEGSLEPARQ TTGEINLSTS FLMPGLYIPE 840 HTQQQFRGML VEDAGSSHDL RNLCPAGEAM FDERVPEYSW TNPPCSNGIA TNQVPLPVEK 900 MPQFSSRPEV TSVTIKATYR EDIIRFRLCL NSGIYKLKEE VAKRLKLEMG TFDIKYLDDD 960 HEWVLITCDA DLQECIDISR SSGSNVVRLL VHDIMPNLGS SCESSGE*

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

MNFIFRSKPK EFAPPPPAPA TALQQQQHAA GENHRESLMM DLDLDLDASW SFDQIFAAAA  60
SASNPMSPFL VPAASEQPCS PLWAFSDENE DKPNGNALSS GSLRLSNYPR FVTYANEHEA  120
APETVSVTDD KKRIPLPIKG LAPLDYLDSS CIIKERMTQA LRYFKESTGE RVLAQIWAPV  180
KNGGRYVLTT SGQPFVLDPD CNGLHQYRMV SLMYMFSVDG ETDGVLGLPG RVYRKKLPEW  240
TPNVQYYSSK EFPRLNHALD YNVRGTLALP VFEPSGQSCV GVLELIMTSQ KINYAPEVDK  300
VCKALEAVNL KSSEILDYPN HQICNEGRQN ALVEILEILT AVCETYKLPL AQTWVPCRHR  360
SVLADGGGFK KSCSSFDGSC MGQVCMSTTD VAFYVVDAHM WGFREACAEH HLQKGQGVAG  420
RAYASQKSCF CEDIGQFCKT EYPLVHYARL FGLSSCLAIC LRSTHTGNDD YILEFFLPPN  480
DGDYTDQLAL LNSLLLTMKQ HFRSLRVASG EELEHNWGSV EIIKASTEEK LGSRFDSVPT  540
TKSLPQSASV ANGRTHPDLM EEQQSPVALN VAKGAEGVNG TAEAHNHASV PENKQTGKKS  600
ERKRGKAEKT ISLEVLQQYF AGSLKDAAKS LGVCPTTMKR ICRQHGISRW PSRKINKVNR  660
SLSKLKRVIE SVQGADGTFS LTSLAPNSLP VAVGSISWPA GINGSPCKAS EYQEEKNEFS  720
NHGTPGSHEE AEPMDQMLGS RIIGNEELSP KQNGFVREGS HRSRTGSFSR EESTGTPTSH  780
GSCQGSPSPA NESSPQNELV NSPTQESVMK VEGSLEPARQ TTGEINLSTS FLMPGLYIPE  840
HTQQQFRGML VEDAGSSHDL RNLCPAGEAM FDERVPEYSW TNPPCSNGIA TNQVPLPVEK  900
MPQFSSRPEV TSVTIKATYR EDIIRFRLCL NSGIYKLKEE VAKRLKLEMG TFDIKYLDDD  960
HEWVLITCDA DLQECIDISR SSGSNVVRLL VHDIMPNLGS SCESSGE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400021692

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343817.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M1AWK0	0.0	M1AWK0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400031945	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400021692

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]