PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021345
Common NameLOC102585836
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 497aa    MW: 55166.9 Da    PI: 4.8784
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021345genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.93.6e-1031104901374
                  GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalkl 83 
                           lv+lL+++Aea++  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  s++ +a    +p+ ++e+++ ++laa++l
  PGSC0003DMP400021345 110 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGaTNMERLAAHFTDALQALLDGAASGTLHAKlmfSPNYKDEHHQGDVLAAFQL 198
                           68***********85554449****************99*******************77777665422355555555599******** PP

                  GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakf 168
                           ++++sP++kf+h+taNqaI e+v +++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ f
  PGSC0003DMP400021345 199 LQDMSPFVKFGHFTANQAIFESVTHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAF 287
                           *****************************************************776556*********888899999************ PP

                  GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFle 255
                           A+++g pf+f+    ++ e +++ +L++ +gEal++n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e+    ++e F+ 
  PGSC0003DMP400021345 288 ATSIGQPFSFHHCRLDSDEIFKPTNLKLVRGEALIINCMLHLPHFSYRASDS---VASFLSGSKTLNPRLVTLVEEELRPigDEEGFMG 373
                           ************99999999************************98554444...459*******************987767889*** PP

                  GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                           rf+++l++ysal+dslea++p +s++r+ vEr++lg++i+  +a   ++r e+++   +W e+l+ +GF + ++s  + +qaklll  +
  PGSC0003DMP400021345 374 RFMDTLHHYSALYDSLEAGFPLQSRARALVERVFLGPRITGSLARIYRARGEEER--CSWGEWLSGVGFCESNISFANHCQAKLLLGLF 460
                           ************************************************9877666..89****************************** PP

                  GRAS 345 ksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                           + dgyrvee   + lvlgWk+r+L+s+S W+
  PGSC0003DMP400021345 461 N-DGYRVEEIgTNKLVLGWKSRRLLSASIWT 490
                           *.******9768999***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.8184470IPR005202Transcription factor GRAS
PfamPF035141.3E-100110490IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAMMVDETIS DFDCYGSLST PTTTITTTTT SSSSEDDHGC TWNDWSPVFD WDAFSGGDNF  60
QDLIESMIQG SGNCFHNSEE DSAEIMEEEE EEESGDSNNN QSEDINGLKL VHLLMAAAEA  120
LTGVNKSREL ARVILVRLKE LASPNGATNM ERLAAHFTDA LQALLDGAAS GTLHAKLMFS  180
PNYKDEHHQG DVLAAFQLLQ DMSPFVKFGH FTANQAIFES VTHDRRVHIV DYDIMEGIQW  240
ASLMQALVSR KDGPPTPHLR ITALSRSGSG RRSFGTVQET GRRLTAFATS IGQPFSFHHC  300
RLDSDEIFKP TNLKLVRGEA LIINCMLHLP HFSYRASDSV ASFLSGSKTL NPRLVTLVEE  360
ELRPIGDEEG FMGRFMDTLH HYSALYDSLE AGFPLQSRAR ALVERVFLGP RITGSLARIY  420
RARGEEERCS WGEWLSGVGF CESNISFANH CQAKLLLGLF NDGYRVEEIG TNKLVLGWKS  480
RRLLSASIWT TMDIDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-59994907378Protein SCARECROW
5b3h_D3e-59994907378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021345
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351875.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLM1AVQ80.0M1AVQ8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000314750.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-157GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]