PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020160
Common NameLOC102578479
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 436aa    MW: 46976.5 Da    PI: 8.5477
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020160genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.7e-114974126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ++ + C++++r+G C yG++C+F+H+
  PGSC0003DMP400020160 49 PGVPDCSYYLRNGSCGYGPNCRFNHP 74
                          5789*********************8 PP
2zf-CCCH40.45e-1397122227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C++f+rtGtCk+G +CkF+H++
  PGSC0003DMP400020160  97 GEPICQYFLRTGTCKFGVSCKFHHPR 122
                           579*********************96 PP
3zf-CCCH34.33.9e-11146168527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           +C ++++tG+Ck+G +CkF+H++
  PGSC0003DMP400020160 146 ECTYYLKTGHCKFGITCKFHHPQ 168
                           7********************97 PP
4zf-CCCH37.83.3e-12299324227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++ +tG Ck+G++CkF+H+p
  PGSC0003DMP400020160 299 GQSICQYYVKTGDCKFGSSCKFHHPP 324
                           7899********************97 PP
5zf-CCCH32.81.2e-10345370227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +  +C+f++  G+Ck+G+ CkF H++
  PGSC0003DMP400020160 345 GVQPCSFYLLKGFCKFGSACKFDHPM 370
                           6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.844876IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-64875IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-95074IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-55474IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-795122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.71395123IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-1097122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-698123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-6100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295141169IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-5141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6145169IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8146168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4147167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854297325IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6297324IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6300325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-6301323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394343371IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-7343370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5345372IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8345370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4347368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MELYGPSTGS NGSQSDHQSE WVAVEQETGL DGSMQKLGLF GREVYPERPG VPDCSYYLRN  60
GSCGYGPNCR FNHPSDRDRR SGGKMQLEGV EFPERTGEPI CQYFLRTGTC KFGVSCKFHH  120
PRNFGGTLSN IPLNTYGYPL RTGEIECTYY LKTGHCKFGI TCKFHHPQPA GMSVPAPARP  180
FYPTVQSLPA PPEECNSALT GLRVARPPIL PGSYVPSAYG PVLLHPGVVT IQNWSPYSGP  240
VSPALSPGVH PSAGLTSVYG MSPLASSPHA FAGPYSPLPP AGSPSSKTQK EKSFPERPGQ  300
SICQYYVKTG DCKFGSSCKF HHPPDWIASK TNCAISPIGL PLRPGVQPCS FYLLKGFCKF  360
GSACKFDHPM GTVQYSSSAS SLPDLQVAPY MLRSSFTLAP MLLPELQAGF VTGSKVDVSL  420
SRAPSSMKVQ LVQLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-163HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359417.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_006359418.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_006359419.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-161C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM1AT380.0M1AT38_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000296030.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-164C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]