PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018451
Common NameLOC102600016
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 478aa    MW: 53542.4 Da    PI: 6.0051
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018451genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.81.5e-12225247426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           + C ++++tGtC+yG +CkF+H+
  PGSC0003DMP400018451 225 VDCAYYMKTGTCQYGLNCKFNHP 247
                           68********************8 PP
2zf-CCCH29.99.9e-10273295527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           +C++++ +G CkyG+ Ck++H++
  PGSC0003DMP400018451 273 ECKYYLTGGGCKYGNACKYSHSK 295
                           6********************95 PP
3zf-CCCH40.44.7e-13316340226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           +++ C+f++rtG CkyG++C+F+H+
  PGSC0003DMP400018451 316 GEKDCPFYMRTGSCKYGSNCRFHHP 340
                           6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.2E-5221248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76221249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6223251IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10225247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4227246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882268296IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011268295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5273295IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7273295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5274295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.502314342IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7314341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-6316342IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10316340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5320339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEAIQSLYMH NLNQPTLDKQ YLGFDPQPPE AASFSSEPNL QNPSRDLPKA EENDVDDDDE  60
MLLRIIFEEL QNLVLNQAFS EERTKGGVYE SIKAKSESED EKDVQMIVEE LKNLVVNQAF  120
SEERAKGDIH EGNGRDEVGN EYGGNHYEDG AGWSENENVI DVKNEKGGEV VSREWGFDHY  180
EDGDLSWSGN GIDVTNENGS KAGSKEWGFN ANGRRLNYPL RPDAVDCAYY MKTGTCQYGL  240
NCKFNHPSRR QNQWAMEKGK QRDESEERAG LIECKYYLTG GGCKYGNACK YSHSKRNGAI  300
SPVLDFNFLG LPIRQGEKDC PFYMRTGSCK YGSNCRFHHP DPTTMTGNNP SLGYNNGGSA  360
PVQSASYSPV SSWSSPRASN ETAPFVPVVY PANQGIHAAG VRVKTLKGEH NKCKDPCGNY  420
KVSATTMAFY FKKKLQANPK YKIKEMRVDM KTAFNINAHF EKCKRAKIIS YPFQNEP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018451
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365065.10.0PREDICTED: uncharacterized protein LOC102600016
TrEMBLM1AP320.0M1AP32_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000270520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-58C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]