PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017925
Common NameLOC102587836
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 655aa    MW: 71939.7 Da    PI: 6.5842
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017925genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.21.3e-1062876543374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           + ++e+A+a+s++++  a ++L+rls+ a+ +g++ qRl+ay++ AL++r++     +    p+ e +   s e++  ++ ++evsP++
  PGSC0003DMP400017925 287 QSIIEAATAISDEKNDVAVEILTRLSQVANIRGSSDQRLTAYMVAALRSRVNP----IDYPPPVLELR---SREHTDTTHNLYEVSPCF 368
                           6789************************************************9....55445555555...7777778888******** PP

                  GRAS  92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                           k+++++aN aIleav+ +  +++H+iDfdi+qG+Q++ Ll+aLa+++ ++p+ l+iT++ +++ g  e+ ++++  L+++A++lgv + 
  PGSC0003DMP400017925 369 KLGFMAANLAILEAVADHpfNKLHVIDFDIGQGGQYLHLLHALAAKKsNSPAVLKITAFTEQAGGVDERFNSINVELNSVANRLGVCLY 457
                           *****************999************************77736677*********8888************************ PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           fnv ++ +++dl+ e+L ++p++alaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv+vveqe++ n+++Fl+r+ ea+ +y a
  PGSC0003DMP400017925 458 FNV-MSCKVTDLSRENLGLEPDDALAVNFAFKLYRLPDESVTTENLRDELLRRVKALSPKVVTVVEQEMNGNTAPFLARVNEACGHYGA 545
                           **9.7889********************************************************************************* PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrvee 353
                           +fdsl+a+++r++ +r+ +E+  l+r+ +n vaceg++r+er+e ++kWr+r+++aGF+p p+s+ +a++ ++ l+     + g++v+e
  PGSC0003DMP400017925 546 IFDSLDATVSRDNMDRVRIEEG-LSRKMSNSVACEGRDRVERCEVFGKWRARMSMAGFGPRPVSQIVADSLRSKLNSGTrgNPGFTVNE 633
                           **********************.*************************************************999876556899***** PP

                  GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                           +sg +++gW++r+L+++SaWr
  PGSC0003DMP400017925 634 QSGGICFGWMGRTLTVASAWR 654
                           ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.083259632IPR005202Transcription factor GRAS
PfamPF035144.5E-104287654IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MSSGFSGEFY GAGGSNNGRS TINNNSQRPY SSPLSGILPD PVTQIVHQGR PNLMGKRSLA  60
EFQQQQQLQF LQLQQQQQQQ KQQQQQMMLL QQQQQQGLGF YLRNVKPRSY QQSSPMSPLS  120
PVDFSVAAAA ASSISSEFSS NSNVSTMMNT RHALPVHQQF RSQPANIGGF LSPGIQNYST  180
GVSSLNPVQN RATIGVQELL SQESDKKMMN CLQEIEKQLL DDNDEEEGDT VSVVTNNEWS  240
ETIQNLISPC HNQNQNQIQK LASLSPSSST SSCASSTESP SISCPKQSII EAATAISDEK  300
NDVAVEILTR LSQVANIRGS SDQRLTAYMV AALRSRVNPI DYPPPVLELR SREHTDTTHN  360
LYEVSPCFKL GFMAANLAIL EAVADHPFNK LHVIDFDIGQ GGQYLHLLHA LAAKKSNSPA  420
VLKITAFTEQ AGGVDERFNS INVELNSVAN RLGVCLYFNV MSCKVTDLSR ENLGLEPDDA  480
LAVNFAFKLY RLPDESVTTE NLRDELLRRV KALSPKVVTV VEQEMNGNTA PFLARVNEAC  540
GHYGAIFDSL DATVSRDNMD RVRIEEGLSR KMSNSVACEG RDRVERCEVF GKWRARMSMA  600
GFGPRPVSQI VADSLRSKLN SGTRGNPGFT VNEQSGGICF GWMGRTLTVA SAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-412876546375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017925
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353907.10.0PREDICTED: scarecrow-like protein 8
TrEMBLM1AMW70.0M1AMW7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000262400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-149SCARECROW-like 8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]