PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010352
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 313aa    MW: 35237.5 Da    PI: 7.4294
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010352genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-18102152256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p +   r r++lg+++ ae Aa a+++a+ kl+ge
  PGSC0003DMP400010352 102 LYRGVRQRH-WGKWVAEIRLPQK---RMRVWLGTYDNAEAAAYAYDRAAYKLRGE 152
                           59******9.**********954...59*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.67E-17101161No hitNo description
SMARTSM003802.3E-35102165IPR001471AP2/ERF domain
PROSITE profilePS5103222.972102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-30102160IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22102160IPR016177DNA-binding domain
PfamPF008476.4E-12103152IPR001471AP2/ERF domain
PRINTSPR003671.8E-12103114IPR001471AP2/ERF domain
PRINTSPR003671.8E-12141161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSYTYDEAAQ IRSSLSQILL TSSTNTLDSI FFHCQEPKNQ MTTTSPVLEP LCSSVYLRQK  60
DLLQNFWEQN RTNITIPTTS TQTPLQESLY SQRYVSPNKK KLYRGVRQRH WGKWVAEIRL  120
PQKRMRVWLG TYDNAEAAAY AYDRAAYKLR GEYARLNFPN LRDPSELGFG DSAKMNALKN  180
SVDAKIQAIC QKVKRERAKK GGKKIVESEK KVAKNVDLDS SSCSSSSLVD SESWSHSDVI  240
SQSSSDDGFL NSEKSPCSVL GDCPMGPEND NCHVTSITHH FERSVLESEF EDYSLAAMPS  300
FDPELIWAVL AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2099159263ATERF1
3gcc_A4e-2099159263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010352
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352251.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W28e-66ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLM1A5620.0M1A562_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000149530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.16e-53ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]