PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400010273

Common Name

LOC102581207

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 1016aa MW: 110321 Da PI: 6.111

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400010273	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	608	659	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PGSC0003DMP400010273 608 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 659 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.643	596	679	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	611	659	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.8E-19	919	1005	No hit	No description
SMART	SM00666	7.7E-24	920	1002	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.2E-22	920	1001	No hit	No description
PROSITE profile	PS51745	21.981	920	1002	IPR000270	PB1 domain
Pfam	PF00564	1.0E-17	921	1001	IPR000270	PB1 domain
CDD	cd06407	2.27E-30	921	1001	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1016 aa Download sequence Send to blast
MSEPEGGMTQ NHLPKSKELT PLPHTASTAP VTERESMMMD LDFDIDASWS FDQIFAAAAA 60 VSSNPASPFL PCSPLWAFSD DNDEKPAGNG LSGALRISGH PRFVAYTGDI EGTTETVSVN 120 ADKGRLPSPI SGLIPGDNPD GSCIIKERMT QALRYLKEST GERVLAQVWA PVKEAGRSVL 180 TTSGQPFVLD PECNGLHQYR TVSLMYMFAA DGETDGVLGL PGRVFRLKLP EWTPNVQYYS 240 SKEFPRLDHA LHYNVRGTLA LPVFEPSGRS CVGVLELIMT SQKINYAAEV DKVCKALEAV 300 NLKSSDILDH PNTQVYVMGY MNQICNEGRQ NALVDILEIL TAVCETYKLP LAQTWVPCRH 360 RSVLADGGGL KKSCSSFDGS CMGQICMSTT DVAFYVVDAH MWGFRDACAE HHLQRGQGVA 420 GRAYASRKSC YCEDITKFCK TEYPLVHYAR MFGLTSCFAI CLRSSHTAND DYILEFFLPP 480 NSGDYSDQQA LLNSLLLTMK QHFRSLSIAS GGELEHDWSS VEIIQASMEE KIDAKPESVP 540 TPITSPQLTS LPNGWMHLDP VGEQQSAVGS NVSKGARSTS GTGEAPNHVS NSDNKTSGKK 600 SERKRGKAEK TISLEVLQQY FAGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN 660 RSLSKLKCVI ESVQGAEGAF TLTSLAPNSL PAAVSSISWP AGANVSNLPS SPSSKPSVFP 720 GEKNEFSHHG TPESHIEAEP SNQMLGGRVA RKEEFTPTQN GFLHAEGTRK SRTGSVSREV 780 SAGTPTSHGS CQGSPCAGNE FSPQNELVNS PAHESCMKVG GSLEAARQTT TEINLSSAFL 840 MPQPIIPKHT QEPFGGMLVE DAGSSHDLRN LCLPRDALVD ERVPDYNFTI PPVSDATAKD 900 PVYVPPDAIQ QYSAWPEVTS VTIKATYKED IIRFRLCLNS GTVKLKEEVA KRLKLELGTI 960 DIKYLDDDLE LVPISCDADL QECVDISRSS GSSIVRLLIH DIMSNLGSSC ESSGK*

Sequence ? help Back to Top

Protein Sequence Length: 1016 aa Download sequence Send to blast

MSEPEGGMTQ NHLPKSKELT PLPHTASTAP VTERESMMMD LDFDIDASWS FDQIFAAAAA  60
VSSNPASPFL PCSPLWAFSD DNDEKPAGNG LSGALRISGH PRFVAYTGDI EGTTETVSVN  120
ADKGRLPSPI SGLIPGDNPD GSCIIKERMT QALRYLKEST GERVLAQVWA PVKEAGRSVL  180
TTSGQPFVLD PECNGLHQYR TVSLMYMFAA DGETDGVLGL PGRVFRLKLP EWTPNVQYYS  240
SKEFPRLDHA LHYNVRGTLA LPVFEPSGRS CVGVLELIMT SQKINYAAEV DKVCKALEAV  300
NLKSSDILDH PNTQVYVMGY MNQICNEGRQ NALVDILEIL TAVCETYKLP LAQTWVPCRH  360
RSVLADGGGL KKSCSSFDGS CMGQICMSTT DVAFYVVDAH MWGFRDACAE HHLQRGQGVA  420
GRAYASRKSC YCEDITKFCK TEYPLVHYAR MFGLTSCFAI CLRSSHTAND DYILEFFLPP  480
NSGDYSDQQA LLNSLLLTMK QHFRSLSIAS GGELEHDWSS VEIIQASMEE KIDAKPESVP  540
TPITSPQLTS LPNGWMHLDP VGEQQSAVGS NVSKGARSTS GTGEAPNHVS NSDNKTSGKK  600
SERKRGKAEK TISLEVLQQY FAGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN  660
RSLSKLKCVI ESVQGAEGAF TLTSLAPNSL PAAVSSISWP AGANVSNLPS SPSSKPSVFP  720
GEKNEFSHHG TPESHIEAEP SNQMLGGRVA RKEEFTPTQN GFLHAEGTRK SRTGSVSREV  780
SAGTPTSHGS CQGSPCAGNE FSPQNELVNS PAHESCMKVG GSLEAARQTT TEINLSSAFL  840
MPQPIIPKHT QEPFGGMLVE DAGSSHDLRN LCLPRDALVD ERVPDYNFTI PPVSDATAKD  900
PVYVPPDAIQ QYSAWPEVTS VTIKATYKED IIRFRLCLNS GTVKLKEEVA KRLKLELGTI  960
DIKYLDDDLE LVPISCDADL QECVDISRSS GSSIVRLLIH DIMSNLGSSC ESSGK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400010273

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352238.1	0.0	PREDICTED: protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M1A4Z4	0.0	M1A4Z4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400014837	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400010273
Entrez Gene	102581207

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]