PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009445
Common NameLOC102593128
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 398aa    MW: 43110.5 Da    PI: 8.2294
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009445genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.3e-124469227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          +t++C+f++rtG C yG++C+++H+p
  PGSC0003DMP400009445 44 GTSNCSFYMRTGSCGYGAKCRYNHPP 69
                          799*********************97 PP
2zf-CCCH33.57.1e-1190114327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C++++rt tCk+G++CkF+H++
  PGSC0003DMP400009445  90 EPTCQYYLRTATCKFGASCKFHHPR 114
                           689********************96 PP
3zf-CCCH37.34.5e-12135159226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            +++C+++++tG+Ck+G +CkF+H+
  PGSC0003DMP400009445 135 EERECSYYLKTGQCKFGITCKFHHP 159
                           5799********************9 PP
4zf-CCCH36.96e-12290315126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ++++ C+++ +tG Ck+G++CkF+H+
  PGSC0003DMP400009445 290 PGQPVCQYYIKTGDCKFGSSCKFHHP 315
                           5789*********************8 PP
5zf-CCCH36.96.1e-12337362227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +  +C+f+++ G+Ck+G++CkF H++
  PGSC0003DMP400009445 337 GVQPCSFYMQRGFCKFGGTCKFDHPM 362
                           6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9574270IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-64269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-64370IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-94469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-64568IPR000571Zinc finger, CCCH-type
SMARTSM003560.001487114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46987115IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-890114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-591115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-493114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413134161IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5135160IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4139160IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-6289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835289317IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8291315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6292317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5294315IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-7335362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502335363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6337366IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9337362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-5339360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDLYGRSHSD QQSEWVPVGP ETGLEESMRR LGLWSREAYP ERSGTSNCSF YMRTGSCGYG  60
AKCRYNHPPD RSSVGAVLLE RSEYPERIGE PTCQYYLRTA TCKFGASCKF HHPRNLGGSL  120
SNISLNVYGY PLHPEERECS YYLKTGQCKF GITCKFHHPD HTEVSAPATA RPFYPTASSL  180
PTPPEEYNSA STSSRVARPQ LLSGPYVPGT YGPVLLHPGV VTIQNWSTYS GPVSPALSPG  240
AQPSAGMASI YGMPQLASST AAFAAPYSPL HSAAGPSSSA LKENRFPERP GQPVCQYYIK  300
TGDCKFGSSC KFHHPADWIA SKTDCAFSPL GLPLRPGVQP CSFYMQRGFC KFGGTCKFDH  360
PMGTVRYSPS ASSLPDIPNA PYMSGSSLTL APISSPE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009445
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-157HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-157HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366677.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-162C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM1A3480.0M1A348_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000136470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-164C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]