PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008418
Common NameLOC102602862
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 701aa    MW: 76448.1 Da    PI: 6.2791
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008418genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.51e-853396993374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           ++++++ e + +g++++aq +Larl+++ sp g+p +R+a+y++eAL+   +   + ++  l p++ ++ + + ++ a+k+fse+sP++
  PGSC0003DMP400008418 339 DQIFQASELLLAGQFSNAQMILARLNQQLSPIGKPSRRAAFYIKEALQLPFLL--PCTSTFLLPRSPTPFDCVLKMDAYKAFSEISPLI 425
                           57899999999*************************************99988..555555788888889999**************** PP

                  GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                           +f ++t NqaIlea+  +e++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+  ++e L++fA+  g++fe +v
  PGSC0003DMP400008418 426 QFMNFTSNQAILEALGDAEQIHIIDFDIGFGAQWSSFMQELPSSNRKATSLKITAFASPSTHHSVEIGIMHESLTQFANDAGIRFELEV 514
                           ***************************************************************************************** PP

                  GRAS 181 lvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           +  ++++  +  l++Lr ++ Ea+a+n+ +   +      +     +++L+++k+lsPkvvv  e+ +++++ ++ +++++al+yy +l
  PGSC0003DMP400008418 515 INLDSFDpkSYPLSTLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKHHLIHALQYYETL 597
                           97775541155778999999********99555444..344....456***************************************** PP

                  GRAS 268 fdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                           + s+ +a+l  + +  +k+Er l++++i+n++  + ++      ++  Wr+ + +aGF+pv++s+ ++ qa+++++++++ g++v++++
  PGSC0003DMP400008418 598 LASIdAANL--TPDIGKKIERSLFQPSIENMILGRLRS----PDRMPPWRNLFASAGFSPVAFSNMTEIQAECVVKRTQVGGFHVQKRQ 680
                           ****55554..668899****************99988....9999******************************************* PP

                  GRAS 356 gslvlgWkdrpLvsvSaWr 374
                            slvl+Wk+++L+s+  Wr
  PGSC0003DMP400008418 681 TSLVLCWKQQELLSAVTWR 699
                           ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.299311679IPR005202Transcription factor GRAS
PfamPF035143.6E-83339699IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MIVIPQSSSL PAKGVLGVSG FVPSISSSSS PEAAICKKDA NFTRNEPVSV LDTRSPSPSA  60
SSSSCSYGAQ HGGNTAVPGV GSGKTDGRKE EFVTELQPFT VGLEPEKSGL GFGDLDNLLP  120
EFAGSDQSFL RWISGDVEDP SVSLKQLLNG DLGCGVSLQS SGFEVSATGS LAHSDNVSIS  180
GSNICLNANI EKLSSVIDSI NSRNNNFENL NVNPSLEQKP QPFGPQVMAN QTQFQNVACV  240
NILGSSYDIN QEQPPPKRHN SGTLGGSLLP KVPFFDANCD FMLRKQPLGQ MQPQVNLLPP  300
HQFQPKPLIV PKLEAAGGGG NGNLMVPRHQ LQEQQFIYDQ IFQASELLLA GQFSNAQMIL  360
ARLNQQLSPI GKPSRRAAFY IKEALQLPFL LPCTSTFLLP RSPTPFDCVL KMDAYKAFSE  420
ISPLIQFMNF TSNQAILEAL GDAEQIHIID FDIGFGAQWS SFMQELPSSN RKATSLKITA  480
FASPSTHHSV EIGIMHESLT QFANDAGIRF ELEVINLDSF DPKSYPLSTL RSSECEAIAI  540
NFPIWSISSC LFAFPSLLHC MKQLSPKVVV SLERGCERTE LPLKHHLIHA LQYYETLLAS  600
IDAANLTPDI GKKIERSLFQ PSIENMILGR LRSPDRMPPW RNLFASAGFS PVAFSNMTEI  660
QAECVVKRTQ VGGFHVQKRQ TSLVLCWKQQ ELLSAVTWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2734369825378Protein SCARECROW
5b3h_A1e-2734369824377Protein SCARECROW
5b3h_D1e-2734369824377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355471.10.0PREDICTED: scarecrow-like protein 22
TrEMBLM1A0Q50.0M1A0Q5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000121040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69861931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-100GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]