PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005910
Common NameLOC102591551
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 651aa    MW: 74066.7 Da    PI: 8.9283
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005910genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-09594637445
                           S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                           W++  ++ lv+a k ++++   +W+++a  ++ g+t +qck ++ 
  PGSC0003DMP400005910 594 WSAVQEKALVQALKTFPKEtsqRWERVATAVP-GKTMNQCKKKFA 637
                           ********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.22E-2087175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.2E-2094197IPR001623DnaJ domain
SMARTSM002713.0E-1696171IPR001623DnaJ domain
CDDcd062571.60E-1397168IPR001623DnaJ domain
PROSITE profilePS5007618.59297179IPR001623DnaJ domain
PfamPF002264.4E-1797176IPR001623DnaJ domain
PRINTSPR006251.9E-7102120IPR001623DnaJ domain
PRINTSPR006251.9E-7120135IPR001623DnaJ domain
PRINTSPR006251.9E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.098456511IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-4457503IPR009057Homeodomain-like
SMARTSM007172.8E-4460513IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-6462505IPR009057Homeodomain-like
CDDcd001673.24E-4463503No hitNo description
PROSITE profilePS512939.098589644IPR017884SANT domain
SMARTSM007173.0E-8590642IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-9592647IPR009057Homeodomain-like
PfamPF002492.9E-7594636IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-5594636IPR009057Homeodomain-like
CDDcd001674.42E-6594640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MASRSSIRLI SYSEEIINGE PIFISSNCCP IKAHKYEPAG LAFHSAALRL IGHVEKEDPK  60
DGKEDVPNDK EQTFAYSSES YSSKGKKKSS TGEKVQDHYA LLGLSNLRYL ASEDQIRKSY  120
RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLMDPV RRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFLRNGRWSV TQPIPSLGDE NTPIKEVDSF YNFWYSFKSW  240
REFPHTDEFD LEQAESRDHK RWMERQNAKL SEKARKEETA RVRTLVDNAY RKDPRILGRK  300
EAEKAEKQRK KEAKLLAKKL QEEEAIRIVE EEKRKKEEEG KKAAEVALQQ KKLKEKEKKL  360
LRKERSRLRT LAAPVLSQRL LGLTDDDVEG LCMSLDIEQL RNLCDKADGK GELVISELLR  420
GALGHEHNPK YENKDEKIKS QQNGSLESKK QVPLMSSEKK EKPWSKEEID LLRKGMLKYP  480
KGTSRRWEVI SDYIGTARTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIVSPLST  540
REEVEGVENS SKPESGSAKV ADSQETPSQN TNSQNTDDAP AANGVSSSSD SDIWSAVQEK  600
ALVQALKTFP KETSQRWERV ATAVPGKTMN QCKKKFALLK ENFRNKKSAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-2018629613123Zuotin
5dje_B2e-2018629613123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347682.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLM0ZUP20.0M0ZUP2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000085150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]