PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005118
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 400aa    MW: 45477.9 Da    PI: 6.7274
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005118genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-091254648
                          HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  6 teEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +Ed++l + ++ +G + +W+ Ia+ +   +t  qck rw++yl
  PGSC0003DMP400005118 12 LQEDDILREQIRIHGIDdNWTIIASNFK-DKTTRQCKRRWFTYL 54
                          68*************************9.*************97 PP
2Myb_DNA-binding42.31.8e-1360102145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           +g W++eEd ll  a k +G++ W+ Ia+ +  gRt++ +k+r+ 
  PGSC0003DMP400005118  60 KGGWSPEEDMLLCAAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFT 102
                           688*******************.*********.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3E-6656IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-161361IPR009057Homeodomain-like
PfamPF139211.1E-111371No hitNo description
PROSITE profilePS500908.3511354IPR017877Myb-like domain
CDDcd001671.96E-71354No hitNo description
SuperFamilySSF466893.59E-2434112IPR009057Homeodomain-like
PROSITE profilePS5129419.7955109IPR017930Myb domain
SMARTSM007172.7E-1459107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1962108IPR009057Homeodomain-like
CDDcd001672.42E-1063104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MITTCIDVCF ELQEDDILRE QIRIHGIDDN WTIIASNFKD KTTRQCKRRW FTYLNSDFKK  60
GGWSPEEDML LCAAQKIFGN RWTEIAKVVS GRTDNAVKNR FTTICKKKAK HEVVANENST  120
SYINLNNKRV MFSDRISDVS APDKKLRRRN TIESSVDDCP NNNQSLRHPF AVLAQNVNNL  180
KETYENGTFL KKNDRKINVL MQQEELLALK VNTENSNQSL ENAWKVLDDF LHRMKEGDML  240
KFRHTEMNSG HNTHKNLITN SSSNERNRPS KRQLALSQES GGSSEYNTGS TLISHALSNK  300
TEESQVKTCG HDQEIQSGLQ KSQIGDQTGV QELENGIFCD LLFPHDTPLV CDEMKDNDVS  360
ATAECEYPSP LQVTPQFRSL AEAIPSPKFS ESVSNHCFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-211310813107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148DKKLRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2800452e-94CU280045.2 S.lycopersicum DNA sequence from clone SL_MboI-98C7 on chromosome 4, complete sequence.
GenBankHG9755162e-94HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162729.10.0PREDICTED: transcription factor RAX2-like
TrEMBLM0ZSU80.0M0ZSU8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000073510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41242134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-106MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]