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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1065s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25915.9 Da PI: 4.8393 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.2e-17 | 108 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ r++lg+f++ +Aaka++ a+ k++g SapurV1A.1065s0040.1.p 108 HYRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTFDSDIDAAKAYDCAAFKMRG 158 7********.**********8542..4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-31 | 107 | 167 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-28 | 108 | 166 | No hit | No description |
SMART | SM00380 | 3.6E-35 | 108 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-22 | 108 | 167 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-13 | 108 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.131 | 108 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-13 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-13 | 148 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MATPEESSTL ELIRQHLLGD FTSTDEFINS LESSVASIYI KLENSLSGSE SNSPISDQSY 60 CTQETCRFEI KSENIDLTPP EPMFSDSSNQ SPPPELVKMA DKDETTRHYR GVRRRPWGKF 120 AAEIRDPTRK GSRVWLGTFD SDIDAAKAYD CAAFKMRGRK AILNFPLEAG LSSPPPATGR 180 KKRRVKREEV LPESVDASPE NWNAGWSGGE AEGVSDEEQL SPLSRKPVLL TCQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-27 | 107 | 167 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 186 | RKKRRVKR |
2 | 180 | 185 | KKRRVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1065s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299407.2 | 1e-138 | ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | B9GK33 | 1e-136 | B9GK33_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11800.1 | 1e-137 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 3e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1065s0040.1.p |