PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0351s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 213aa    MW: 23910.1 Da    PI: 8.6594
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0351s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.5e-1865119256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ +++keq + Lee F+++++++ +++e L+ +l+L  rqV vWFqNrRa+ k
  SapurV1A.0351s0110.1.p  65 RKKLRLSKEQSRLLEESFRQHHTLNPRQKEALTLQLKLRPRQVEVWFQNRRARSK 119
                             788899***********************************************98 PP
2HD-ZIP_I/II116.12e-3765154191
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rlskeq++lLEesF+++++L+p++K++l+ +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeL
  SapurV1A.0351s0110.1.p  65 RKKLRLSKEQSRLLEESFRQHHTLNPRQKEALTLQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEEL 151
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reel 91 
                             r +l
  SapurV1A.0351s0110.1.p 152 R-AL 154
                             9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-1649119IPR009057Homeodomain-like
SuperFamilySSF466895.13E-1756122IPR009057Homeodomain-like
PROSITE profilePS5007116.34261121IPR001356Homeobox domain
SMARTSM003892.4E-1563125IPR001356Homeobox domain
CDDcd000861.54E-1464122No hitNo description
PfamPF000463.9E-1565119IPR001356Homeobox domain
SMARTSM003402.0E-21121164IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-9121155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAVSRSSSSS LEFTISMPGF VSSPSFPSSV KDLDINQAPS GAEEEEWISA GREDEEESTN  60
GAPPRKKLRL SKEQSRLLEE SFRQHHTLNP RQKEALTLQL KLRPRQVEVW FQNRRARSKL  120
KQTEMECEYL KRWFGSLTEQ NRRLQREVEE LRALKVDPPT VISPHGCEPL PASTLTMCPR  180
CERVTTTGAD KAFTKTTPPS VATPTTAATL VL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0351s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038655.11e-123PREDICTED: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX13e-83HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-83HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2K1YSC31e-118A0A2K1YSC3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12300.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-69homeobox-leucine zipper protein 17