PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0209s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family S1Fa-like
Protein Properties Length: 89aa    MW: 9708.44 Da    PI: 10.1593
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0209s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA136.75.3e-432388570
                    S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                             +e kGlnPGlivllv+ggl+l+flvgny+ly+yaqk+lPP+kkkPvskkk+k+e+lkqGv++PGe
  SapurV1A.0209s0130.1.p 23 DAEPKGLNPGLIVLLVIGGLVLTFLVGNYVLYTYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE 88
                            5799*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.3E-402488IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MDDDFEFSNS PPSFQNMGDL IKDAEPKGLN PGLIVLLVIG GLVLTFLVGN YVLYTYAQKT  60
LPPKKKKPVS KKKMKKERLK QGVSAPGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0209s0130.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2242061e-124CU224206.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010852.11e-43PREDICTED: DNA-binding protein S1FA
SwissprotQ423371e-15S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA9P8W54e-34A9P8W5_POPTR; S1Fa-like family protein
STRINGPOPTR_0016s08890.17e-35(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355