PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0201s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 559aa    MW: 62055.7 Da    PI: 6.9725
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0201s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA374.7e-123259835
                    GATA  8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             TplWR+gp  ++ LCnaCG ++r kg+
  SapurV1A.0201s0160.1.p 32 GTPLWRNGPPEKPVLCNACGSRWRTKGT 59
                            5********88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00392571IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.04E-63163No hitNo description
PfamPF003208.2E-103259IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-83259IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.62E-113372No hitNo description
PfamPF139199.9E-11295387IPR028020ASX homology domain
PfamPF165503.9E-9316381IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MDYLLRGGNH IVDLSFLVYK IQSTVSSRAF SGTPLWRNGP PEKPVLCNAC GSRWRTKGTL  60
ANYTPLHARA GPDDYEDHRV SRLKSISINK NKEVKLLKRK PNYDHRVDGG VALDYNQGYR  120
NVVDEDTSNR SSSGSAISNS ESCAQFGGAD ASDLTGPSQS VVWDSLVPSR KRTCVTKPSP  180
VEKLTKDLYT ILHEQQSSCF SGSSEEDLLF DNETPMVSVE IGHGSVLIRH PSSIARDEES  240
EASSLSVENK QYLTNEAYSH LVMLPVHNEN KSVNMTYPIT VKTKNLSRQG MQQEQLDRDK  300
SPHIHILGSC NSPLCSVDLN DILNFEEFAR HMTNEEQQQL LKYLPPLDTA KRPHSIKSMF  360
ESPQFKENIN SYQQLLSEGV FDLSFLEAKT EDCKSLERLT LSNLSKSKWV ERYHLLKKCK  420
NSIGMSLGGK GPNPNVVASS NLIGAKRSRD NLSQKFSEAK SMKSPKRIVM KATYEIKELI  480
DNDGSCFSPR SLFALPPDGS SLMLESLHFV DESSDQDLLL DIPSNGSFAQ AELLHPPNSF  540
GQQASTSSSS IYPHLGCP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0201s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470260.0EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368951.10.0GATA transcription factor 26
SwissprotQ8W4H11e-142GAT26_ARATH; GATA transcription factor 26
TrEMBLU5GPN90.0U5GPN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-145GATA transcription factor 26