PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0167s0180.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WOX

Protein Properties

Length: 215aa MW: 24705.8 Da PI: 9.4615

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0167s0180.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66	5.1e-21	78	137	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+++ r+p+ +++e+++++l +++ ++V++WFqN++a+e++ SapurV1A.0167s0180.1.p 78 TRWNPTQEQIGILEMLYREgMRTPNGQQIEDITAQLsnygKIEGKNVFYWFQNHKARERQ 137 7***************99************************************97 PP
2	Wus_type_Homeobox	117.9	4.5e-38	78	139	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly++G+rtPn ++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq SapurV1A.0167s0180.1.p 78 TRWNPTQEQIGILEMLYREGMRTPNGQQIEDITAQLSNYGKIEGKNVFYWFQNHKARERQKQ 139 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.236	73	138	IPR001356	Homeobox domain
SMART	SM00389	1.3E-6	75	142	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.27E-12	75	144	IPR009057	Homeodomain-like
Pfam	PF00046	9.2E-19	78	137	IPR001356	Homeobox domain
CDD	cd00086	5.76E-5	78	139	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.4E-8	79	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MGSMKVHQLA RGFWEHEPFL TLGCKRLRPL APKLASTDHS ATSFDLKSFI RPDSGPRKLA 60 SSDEKKDSPQ GETHPGGTRW NPTQEQIGIL EMLYREGMRT PNGQQIEDIT AQLSNYGKIE 120 GKNVFYWFQN HKARERQKQK RNSLGLSHSP RTPPPITIIS LDTRGEVERE EDSPYKRKCR 180 SWTFEFLELE DSRSCRDQKG DRTLELFPLH PEGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0167s0180.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF982703	0.0	KF982703.1 Populus tomentosa WOX4a (WOX4a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301170.1	1e-146	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	4e-71	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A1L6K461	1e-147	A0A1L6K461_POPTO; Homeobox-leucine zipper transcription factor family protein-like 1
STRING	POPTR_0002s12560.1	1e-146	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6132	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-73	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	SapurV1A.0167s0180.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]