PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0135s0330.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 296aa    MW: 33848 Da    PI: 6.2004
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0135s0330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix591.2e-1833120286
                trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                             Wt+qe+ +Li+ ++e++ +l+rg+lk+ +Weev+  +           ++s++qC++k+e+l++ry+ +k+    +    +  ++yf
  SapurV1A.0135s0330.1.p  33 WTHQETTHLIQSYQEKWYSLKRGQLKASQWEEVAVTVaarcgyDYNHPSKSAVQCRHKMEKLRRRYRDEKRVVALG---GTCYWQYF 116
                             ***********************************998666654445589***********************997...566899** PP

                trihelix  83 dqle 86 
                             d ++
  SapurV1A.0135s0330.1.p 117 DLMD 120
                             9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-1832122No hitNo description
PROSITE profilePS500906.0053295IPR017877Myb-like domain
SMARTSM005951.1E-640127IPR006578MADF domain
PROSITE profilePS5106110.348246295IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSTPSPSPSP PPPLSPPTKP TPLSSKKTQP LPWTHQETTH LIQSYQEKWY SLKRGQLKAS  60
QWEEVAVTVA ARCGYDYNHP SKSAVQCRHK MEKLRRRYRD EKRVVALGGT CYWQYFDLMD  120
SLERGPLPIS AQPLARVPCQ ENYHARNISN GVLGENDDDD KGGDEDEDDD DDDDEDYGYR  180
SKLRSRSINY ILRKPSIVNR YAGGGPSGVS REAEKKRKRE EVEEEGEEEG EEGVEMGLAG  240
QIKAFSERMV KLERKKLEVM KETERSRMEM ENKKLEMILD SHRKIVHMIG EVFGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0135s0330.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450635.11e-156trihelix transcription factor ASIL1
TrEMBLA0A2K2BNT61e-155A0A2K2BNT6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s24480.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-47Trihelix family protein