PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0107s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 545aa    MW: 60352.6 Da    PI: 6.713
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0107s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.31.2e-14741135
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                            C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  SapurV1A.0107s0250.1.p  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                            99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-10545No hitNo description
CDDcd002027.70E-16651No hitNo description
Gene3DG3DSA:3.30.50.101.5E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139196.5E-12282373IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RADPDDYEDH  60
RVSRLKSVSI SKDKEVKLLK RKPNYDYRVA GGVALDYNQG YRKVVDEDTS NRSSSGSAIS  120
NPESSAQFGS AEASDLTGPA QSVVWDSLVP SRKRTCVNRP KPSSVEKLTK DLYTILHEQQ  180
SSCLSGSSEE DLLFDNETPM VSVEIGHGSV LIRHPSSIAR DEESEASSLS VENKQYLTNE  240
AYSHPVILPV HNENKSVNII YPITETTKNL IGQGMQQEQL KRDKSPHEKA HILGSHNSPL  300
CSIDLNDILN FEEFARHLTN EEQQQLLKYL PPLDTIKPPY SIESMFDSPQ FKENINSYQQ  360
LLSEGIFDLS FSEAKTEDCK TLKRLTLLNL SKSKWVECFH QLKRCKNSNG KSLVGKGPNP  420
DVVATSNIAG AKRSRDSLNQ KFSEVKLMKS PKRITMKATY ESKELIDNDG SCFSPRSLFA  480
LPPDGSSLML DSLHFVDESS DQDVLLDIPS NGSFAQAELL HSTDSFGQQA SASSSSIYPH  540
LGRP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0107s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470260.0EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031967.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-158GAT26_ARATH; GATA transcription factor 26
TrEMBLA9PFA90.0A9PFA9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-162GATA transcription factor 26