PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0059s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Nin-like

Protein Properties

Length: 979aa MW: 107536 Da PI: 5.1425

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0059s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	53	6.8e-17	597	625	24	52
RWP-RK 24 eLgvclTvLKriCRqyGIkRWPhRkiksl 52 +L+vc+T++KriCRq+GI+RWP+Rki+++ SapurV1A.0059s0050.1.p 597 SLEVCPTTMKRICRQHGISRWPSRKINKV 625 799************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.4	561	645	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-14	597	625	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-21	873	966	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-24	882	963	No hit	No description
SMART	SM00666	6.6E-22	882	964	IPR000270	PB1 domain
PROSITE profile	PS51745	22.491	882	964	IPR000270	PB1 domain
Pfam	PF00564	2.5E-16	883	963	IPR000270	PB1 domain
CDD	cd06407	1.06E-31	883	963	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence Send to blast
MSKPTEGRGG GGGGGEPEGM KSMELDFDLD NSCPLDQISF ISSNPMSPLL ISTSTEQPCS 60 PLWAFSDAVD DRLAVTAAAC QASPAAPRLS DYPIFLTINP NSIDESQGEI DDNSKFPSPF 120 LGLMPIDNPD GYCMIKERMT QALRYFKEST EQHVLAQVWA PVSYRGQHVL TTSGQPFVLD 180 PRSNGLHQYR MVSLMYTFSV DDKSDRELGL PGRVFRQKSP EWTPNVQYYS SKEYSRLDHA 240 QRHNVRGTLA LPVFEPSGQS CVGVVELIMN SQKINYAPEV DKVCKALEAV DLKSSEILDP 300 PCIQICNEGR QNALSEILEI LTMVCETHKL PLAQTWVPCM HRSVLTYGGG LKKSCTSFDG 360 NCNGQVCMST TDVAFYVVDA HIWGFREACI EHHLQKGQGV AGRAFLSHSS CFCPDITQFS 420 KNEYPLVHYA RMFGLTSCFA IFLRSSYTGD DEYILEFFLP PSITDSHEQK TLLGSILSTM 480 KQDFQSLKVA SGMDLEEEGF VEMIQATTNG KLDLRLECIQ MPQPIKYFPD DNALPNEVHI 540 GEIDSEKNEL MFDLDDINYG GSAVQADKRQ TPASHPEKKE TKKPSERKRG KAEKTISLEV 600 CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKRVIESVQ GSEGTFDLTP LTTSPLHVAV 660 GAISWPSNLN GSNQQNSPDS KPPEYHGDRN GSPTCRTSGS DGQAGLEDQL KGCSILSQEK 720 LTVQNRFSLE LGRGSKRSKM RSGSRDGSAG TPTSHGSCQD NPENESAPVK DPSASPFHER 780 CIKAGGVSPE TKELNMSAAF SILDALVATE AQEPFCGMLI EDAGSSKDLR NLCPAVADAI 840 VDEGVPESSW ADPPCSNMLS TQMVAAPLHA IPHATPMQEM KRVTIKATYR EDVIRFRISL 900 SSGIVELKEE VAKRLKLEVG TFDIKYLDDD RECVLIACDA DLLECMDVSR SSSSNIIRLS 960 VHDANANLGS SCESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence Send to blast

MSKPTEGRGG GGGGGEPEGM KSMELDFDLD NSCPLDQISF ISSNPMSPLL ISTSTEQPCS  60
PLWAFSDAVD DRLAVTAAAC QASPAAPRLS DYPIFLTINP NSIDESQGEI DDNSKFPSPF  120
LGLMPIDNPD GYCMIKERMT QALRYFKEST EQHVLAQVWA PVSYRGQHVL TTSGQPFVLD  180
PRSNGLHQYR MVSLMYTFSV DDKSDRELGL PGRVFRQKSP EWTPNVQYYS SKEYSRLDHA  240
QRHNVRGTLA LPVFEPSGQS CVGVVELIMN SQKINYAPEV DKVCKALEAV DLKSSEILDP  300
PCIQICNEGR QNALSEILEI LTMVCETHKL PLAQTWVPCM HRSVLTYGGG LKKSCTSFDG  360
NCNGQVCMST TDVAFYVVDA HIWGFREACI EHHLQKGQGV AGRAFLSHSS CFCPDITQFS  420
KNEYPLVHYA RMFGLTSCFA IFLRSSYTGD DEYILEFFLP PSITDSHEQK TLLGSILSTM  480
KQDFQSLKVA SGMDLEEEGF VEMIQATTNG KLDLRLECIQ MPQPIKYFPD DNALPNEVHI  540
GEIDSEKNEL MFDLDDINYG GSAVQADKRQ TPASHPEKKE TKKPSERKRG KAEKTISLEV  600
CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKRVIESVQ GSEGTFDLTP LTTSPLHVAV  660
GAISWPSNLN GSNQQNSPDS KPPEYHGDRN GSPTCRTSGS DGQAGLEDQL KGCSILSQEK  720
LTVQNRFSLE LGRGSKRSKM RSGSRDGSAG TPTSHGSCQD NPENESAPVK DPSASPFHER  780
CIKAGGVSPE TKELNMSAAF SILDALVATE AQEPFCGMLI EDAGSSKDLR NLCPAVADAI  840
VDEGVPESSW ADPPCSNMLS TQMVAAPLHA IPHATPMQEM KRVTIKATYR EDVIRFRISL  900
SSGIVELKEE VAKRLKLEVG TFDIKYLDDD RECVLIACDA DLLECMDVSR SSSSNIIRLS  960
VHDANANLGS SCESTGEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0059s0050.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453644.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2K2B726	0.0	A0A2K2B726_POPTR; Uncharacterized protein
STRING	POPTR_0003s14300.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	SapurV1A.0059s0050.1.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]