PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0058s0710.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 299aa    MW: 32230.3 Da    PI: 10.5225
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0058s0710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20144193356
                     AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g+
  SapurV1A.0058s0710.1.p 144 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 193
                             9*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-21143200IPR016177DNA-binding domain
SMARTSM003802.6E-31143206IPR001471AP2/ERF domain
PROSITE profilePS5103222.787143200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-29143200IPR001471AP2/ERF domain
PfamPF008476.0E-14144192IPR001471AP2/ERF domain
PRINTSPR003671.3E-10144155IPR001471AP2/ERF domain
CDDcd000182.35E-15144201No hitNo description
PRINTSPR003671.3E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNNKNLLPVP FFPKPETYHL SEMFGLLNEN SSFRGSFLQP QNSFSSPFTS NHYDPTNYSP  60
VSTGISAIVS LPGIIKKPPE APLVLDGIGA VVGQEVLFGT TITKDSETSE FHSISQRIGS  120
KERRQESGAK RNCVNNGAPV QRTYRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTAEEAA  180
RAYDAAARRL RGAKARTNFE IPPVLPPIPS SPSPPSACSG SSLNNAEARR RTSNSKNNKM  240
IGNGGRKCAV VTSVAHLFSN FEGKGASGGN VELDLKLATG FGGHHDGNKG APPPSMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-161441991571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0058s0710.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2149970.0AC214997.1 Populus trichocarpa clone POP013-F22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045670.11e-167PREDICTED: ethylene-responsive transcription factor ERF084-like
TrEMBLB9GGA61e-156B9GGA6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s32050.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.15e-20ERF family protein