PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0035s0170.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Nin-like

Protein Properties

Length: 989aa MW: 108731 Da PI: 5.624

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0035s0170.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.6	1.8e-26	589	637	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 isle+l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP Rk k++ SapurV1A.0035s0170.1.p 589 MISLEVLQQYFTGTLKDAAKSLGVCPTTMKRICRQHGISRWPARKTKKV 637 599*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.29	576	660	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-24	590	637	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-21	885	976	No hit	No description
SMART	SM00666	3.9E-24	892	974	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.7E-25	892	973	No hit	No description
PROSITE profile	PS51745	22.118	892	974	IPR000270	PB1 domain
CDD	cd06407	1.02E-34	893	973	No hit	No description
Pfam	PF00564	3.9E-17	893	973	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MPEPAEVGGG GETEGRKSME FDLDSSWPLD QISFISPYPV SPFPISSPNE QPCSPLWAFS 60 DDYRLLVADG GGQASSPFDG GLRLPDHPIP LTCNPNSETR SKGENDDNSK LPSPFLGLIP 120 IDNPDRYCSI KERMTRALRH FKESTEQHVL AQVWAPVKNG GRYALITSGQ PFVIDPHSIG 180 LHQYRMVSLM YKFSVDGESD GELGLPGRVF RQKLPEWTPN VQYYSSKEYS RLDHALHYNV 240 RGTVALPVFD PFGQSCVGVV ELIMTSQKIN YAPEVDKVCK ALEAVNLKSS EILDPPSMQI 300 CNESRQNALA EILEILTIVC ETQKLPLAQT WVPCMHRSVL ANGGGLKKSC ASFDGGCNGQ 360 VCMSSTDLPF YVVDAHMWGF REACLEHHLQ KGQGVAGRTF LSHSLCFCPD ITQFCKAEYP 420 LVHYARMFGL TSCFAICLRS SYTGDDDYVL EFFLPPSITG SHEWKTLLGS ILAIMKQDFQ 480 SLKVASGMDL EEEEGFVEMI QVSTNGKLDL RLESIQILQS TKSPQEDNAL LNELTVQIDP 540 EKNQLVLDLD IIKNGGSDVQ ADVRKTHASL TGKETRNPKE KKRGKTEIMI SLEVLQQYFT 600 GTLKDAAKSL GVCPTTMKRI CRQHGISRWP ARKTKKVKRV IESVHGTEGA FALTPLTTSP 660 LPVAVGAVSW PSNLKLNGRN QQNSPNSKSP EHHGDKNGSP SCRPPGGDAQ AGFEDQLLRC 720 RVLSLEELTV QNRFSPELGK SSNRSKTRSG SRDESAGTPA HGSCQGSPEN ESAPAKDPSV 780 SPVLERCIKA VGSPEMALLQ SRELNLPAAH SIPDAFVATE AQEQFGGMRI EDAGSSKDFR 840 NLFHAMEEAI VDERVPESSW TNPPCSDTNP TQLIAALSQA TPHVTSRQEM NRVAIKATYR 900 EDIIRFRISQ SSGIVELQEE VAKRLKMEVG TFDIKYLDDD HELVLVACDA DLHECMDVSR 960 SSNSNILRLS VHDANANLGS SCESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MPEPAEVGGG GETEGRKSME FDLDSSWPLD QISFISPYPV SPFPISSPNE QPCSPLWAFS  60
DDYRLLVADG GGQASSPFDG GLRLPDHPIP LTCNPNSETR SKGENDDNSK LPSPFLGLIP  120
IDNPDRYCSI KERMTRALRH FKESTEQHVL AQVWAPVKNG GRYALITSGQ PFVIDPHSIG  180
LHQYRMVSLM YKFSVDGESD GELGLPGRVF RQKLPEWTPN VQYYSSKEYS RLDHALHYNV  240
RGTVALPVFD PFGQSCVGVV ELIMTSQKIN YAPEVDKVCK ALEAVNLKSS EILDPPSMQI  300
CNESRQNALA EILEILTIVC ETQKLPLAQT WVPCMHRSVL ANGGGLKKSC ASFDGGCNGQ  360
VCMSSTDLPF YVVDAHMWGF REACLEHHLQ KGQGVAGRTF LSHSLCFCPD ITQFCKAEYP  420
LVHYARMFGL TSCFAICLRS SYTGDDDYVL EFFLPPSITG SHEWKTLLGS ILAIMKQDFQ  480
SLKVASGMDL EEEEGFVEMI QVSTNGKLDL RLESIQILQS TKSPQEDNAL LNELTVQIDP  540
EKNQLVLDLD IIKNGGSDVQ ADVRKTHASL TGKETRNPKE KKRGKTEIMI SLEVLQQYFT  600
GTLKDAAKSL GVCPTTMKRI CRQHGISRWP ARKTKKVKRV IESVHGTEGA FALTPLTTSP  660
LPVAVGAVSW PSNLKLNGRN QQNSPNSKSP EHHGDKNGSP SCRPPGGDAQ AGFEDQLLRC  720
RVLSLEELTV QNRFSPELGK SSNRSKTRSG SRDESAGTPA HGSCQGSPEN ESAPAKDPSV  780
SPVLERCIKA VGSPEMALLQ SRELNLPAAH SIPDAFVATE AQEQFGGMRI EDAGSSKDFR  840
NLFHAMEEAI VDERVPESSW TNPPCSDTNP TQLIAALSQA TPHVTSRQEM NRVAIKATYR  900
EDIIRFRISQ SSGIVELQEE VAKRLKMEVG TFDIKYLDDD HELVLVACDA DLHECMDVSR  960
SSNSNILRLS VHDANANLGS SCESTGEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0035s0170.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024449513.1	0.0	protein NLP7 isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2K2BUQ7	0.0	A0A2K2BUQ7_POPTR; Uncharacterized protein
STRING	POPTR_0001s10970.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	SapurV1A.0035s0170.1.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]