PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0033s0350.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 250aa    MW: 27613.3 Da    PI: 6.755
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0033s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.5e-18166200135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  SapurV1A.0033s0350.1.p 166 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 200
                             *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.1E-701247IPR016679Transcription factor, GATA, plant
SMARTSM004012.2E-16160210IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.8E-14164198IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-14164223No hitNo description
PROSITE profilePS5011411.385164196IPR000679Zinc finger, GATA-type
CDDcd002023.87E-14165212No hitNo description
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
PfamPF003206.5E-16166200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDFYGAVSTS APDYFPIDDL LDFSNDDLLT SSTDHHHHHL PPPVTSSIHH HHHHFPSSTT  60
YINNTSSDLS ADFTDHLSVP SDDVAELEWL SQFMEDSFTD FPSTINIPAD TSSRNRSCGK  120
GSRTTTAATS SSADSETAVT GESRLKKGNN RAPHSSAETE GGVRRCTHCA SEKTPQWRTG  180
PLGPKTLCNA CGVRYKSGRL VPEYRPAASP TFVLTQHSNS HRKVLELRRQ KEMMLRLQQQ  240
HGYQGYEVC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0033s0350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017443.11e-140PREDICTED: GATA transcription factor 4-like
SwissprotO497418e-64GATA2_ARATH; GATA transcription factor 2
TrEMBLB9GPB11e-138B9GPB1_POPTR; GATA transcription factor
STRINGPOPTR_0002s14380.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-61GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]