PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0043800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CO-like
Protein Properties Length: 382aa    MW: 40304.9 Da    PI: 4.6936
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0043800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-063978437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    r+C+ +ee  +  +C+ ++  lC  C    H        H
  Spipo6G0043800 39 RRCDFCEEAAALVYCRADSARLCLACDRLVHAAntvssrH 78
                    89******99*****************9999655555556 PP
2CCT371.2e-133483751643
             CCT  16 kFeKkirYesRKavAesRpRvKGrFvkq 43 
                     +++K+irYesRKa+A+ R R++GrF+k 
  Spipo6G0043800 348 RYDKHIRYESRKARADGRLRIRGRFAKV 375
                     79************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-123683IPR000315B-box-type zinc finger
PROSITE profilePS501199.7273683IPR000315B-box-type zinc finger
CDDcd000211.43E-73983No hitNo description
PROSITE profilePS510179.157333375IPR010402CCT domain
PfamPF062039.4E-9348374IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MASAAGSGCA RGDIFYYLQS SQRQQQGSYS DESGSDGRRR CDFCEEAAAL VYCRADSARL  60
CLACDRLVHA ANTVSSRHSR SLICDSCVSA PASLLRCSAA SPGGQRRREG HPLLLCANCD  120
FDAGEVGRAA ERRPLEPYSG CPAAEEMISL LGVPVEEEKV LLVAGDGDGG GGGDGGGDEG  180
LFGDDGWMWE TPPILCMEDL LLPITPFHGF PAVGVPPPPK DRNPACGRHK EEILRQLRGM  240
DLPEGFEPLE PDVAFHPPEG LEQGAMPSNV EDDDASPIVP LSGSQAEAAS EDCRRESRWD  300
APSTEQQPET SVVEGKALFD GTIAGAGSVG GIGAERAGAA PPSPAAARYD KHIRYESRKA  360
RADGRLRIRG RFAKVGRTPA A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZCH44e-93A0A1D1ZCH4_9ARAE; Zinc finger protein CONSTANS-LIKE 13
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.18e-53B-box type zinc finger protein with CCT domain