PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo31G0000300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HB-other

Protein Properties

Length: 1153aa MW: 126790 Da PI: 8.2537

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo31G0000300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.2	3.3e-14	18	67	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ q+e Le+l+ +nryp+++++e+ A+ l+Lt +qV++WF rR kekk Spipo31G0000300 18 SQIQIEFLERLYSENRYPNQKDIEDCASILSLTYNQVRMWFTKRRRKEKK 67 678**********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.2E-9	10	72	IPR001356	Homeobox domain
CDD	cd00086	1.17E-11	16	69	No hit	No description
SuperFamily	SSF46689	2.18E-12	17	69	IPR009057	Homeodomain-like
Pfam	PF00046	1.6E-11	18	67	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-12	19	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.847	21	68	IPR001356	Homeobox domain
SMART	SM00571	3.7E-7	401	460	IPR018501	DDT domain
PROSITE profile	PS50827	11.851	401	460	IPR018501	DDT domain
Pfam	PF02791	4.5E-10	402	457	IPR018501	DDT domain
Pfam	PF15612	2.1E-7	686	726	IPR028942	WHIM1 domain
Pfam	PF15613	4.7E-10	779	851	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1153 aa Download sequence Send to blast
MEGAAADAEQ EHGLKKKSQI QIEFLERLYS ENRYPNQKDI EDCASILSLT YNQVRMWFTK 60 RRRKEKKENE KLAANRKSSS VSMASTSHGR TMVNKKASAR YTERKTYATN RGKDAEEMRN 120 LTHSKNYKVQ KSMRIGMKHK QSAAGQWKKN SAVSVEGLLQ EKSFLRPQVL FPKDYILKRI 180 FRKDGPPLGV EFDCLPEKGF GCHAGSYSCP HSCRSSKRIL ERRKACESSL SDMQALYNGH 240 APAKRHGIGK GLMTVWRVAN PESQSIPTGV DFVNEDSSCS RPKRKNMAGS SSQGRKAASS 300 RKRKMPCKKD GLQMPHTVEC NLGILSSASR EEPISPVNLM DDEELELSEL QARPNPPRCS 360 AHLASRGRSG CPLCKDMLAR FPPPSVRMKQ PICGKPWDSS PENVRKFFKV LCFLYTHAAV 420 IDLSPFTLDE LAQAFHDKDS MLLGSIHVAL LRLLLSDVAK ELTDGFFPRG SKDCRFLGFL 480 HSVRQRELDV DFWSGSLNAL TWVEILRQVM ISAGYGSRKH STRRSRGEDG NAMAKYGLRS 540 CTLKGELYSI LSEQGSTGSK VNDLAKASQI VGLDLCSTPA ELEALICCTL SSDCTLFEKI 600 GHSAYRLRRG STAAKKSTED SESDTEYSGS VDDDDDSADS SSSSGGEDEP SGLDCSGGAT 660 WLDKPLRRGG RRAAAQSAEI DESFSGAGWL LGLMEGEYSD LTIEEKLDAL AALVDITGSC 720 SSLRMEEPAG GRSVATPNLN YRGSGGKIKK AAPPTGRDLS SSLAQLASKS AGGTHQLQAV 780 PLGSDRRYNN YWLFLGPCGS RDPGHRRVYF ESSEDGHWEV IDTDEALSAL LSALDGRGAR 840 ECLLLASLRR REACLSEAMA EFTSATITCH HHPSSDTDVS SGHSSSPISD VDNNLVCEGG 900 ADSLPPGAVV PEVGRRAEER RQQWARAQAF DQWLWGSFYG ELGAARLGRR RFGECLARCE 960 ACHDLFWRDE KHCRICHVTF ELDFDQEERF LIHAATCRPA VDCGGAAGFP SHRVLPSQLQ 1020 ALKAAVHALE ACMPEDALVD AWRRSAHKLW VKRLRRVSSM PELFQVVADF VGAIREGWLQ 1080 RCCSASLPGG AVLDDVAVLF QTMPQTTSAF ALWLVKLDSL VAPPHLRQLH GPAAPPTSAP 1140 AKSRPLSLSL YC*

Sequence ? help Back to Top

Protein Sequence Length: 1153 aa Download sequence Send to blast

MEGAAADAEQ EHGLKKKSQI QIEFLERLYS ENRYPNQKDI EDCASILSLT YNQVRMWFTK  60
RRRKEKKENE KLAANRKSSS VSMASTSHGR TMVNKKASAR YTERKTYATN RGKDAEEMRN  120
LTHSKNYKVQ KSMRIGMKHK QSAAGQWKKN SAVSVEGLLQ EKSFLRPQVL FPKDYILKRI  180
FRKDGPPLGV EFDCLPEKGF GCHAGSYSCP HSCRSSKRIL ERRKACESSL SDMQALYNGH  240
APAKRHGIGK GLMTVWRVAN PESQSIPTGV DFVNEDSSCS RPKRKNMAGS SSQGRKAASS  300
RKRKMPCKKD GLQMPHTVEC NLGILSSASR EEPISPVNLM DDEELELSEL QARPNPPRCS  360
AHLASRGRSG CPLCKDMLAR FPPPSVRMKQ PICGKPWDSS PENVRKFFKV LCFLYTHAAV  420
IDLSPFTLDE LAQAFHDKDS MLLGSIHVAL LRLLLSDVAK ELTDGFFPRG SKDCRFLGFL  480
HSVRQRELDV DFWSGSLNAL TWVEILRQVM ISAGYGSRKH STRRSRGEDG NAMAKYGLRS  540
CTLKGELYSI LSEQGSTGSK VNDLAKASQI VGLDLCSTPA ELEALICCTL SSDCTLFEKI  600
GHSAYRLRRG STAAKKSTED SESDTEYSGS VDDDDDSADS SSSSGGEDEP SGLDCSGGAT  660
WLDKPLRRGG RRAAAQSAEI DESFSGAGWL LGLMEGEYSD LTIEEKLDAL AALVDITGSC  720
SSLRMEEPAG GRSVATPNLN YRGSGGKIKK AAPPTGRDLS SSLAQLASKS AGGTHQLQAV  780
PLGSDRRYNN YWLFLGPCGS RDPGHRRVYF ESSEDGHWEV IDTDEALSAL LSALDGRGAR  840
ECLLLASLRR REACLSEAMA EFTSATITCH HHPSSDTDVS SGHSSSPISD VDNNLVCEGG  900
ADSLPPGAVV PEVGRRAEER RQQWARAQAF DQWLWGSFYG ELGAARLGRR RFGECLARCE  960
ACHDLFWRDE KHCRICHVTF ELDFDQEERF LIHAATCRPA VDCGGAAGFP SHRVLPSQLQ  1020
ALKAAVHALE ACMPEDALVD AWRRSAHKLW VKRLRRVSSM PELFQVVADF VGAIREGWLQ  1080
RCCSASLPGG AVLDDVAVLF QTMPQTTSAF ALWLVKLDSL VAPPHLRQLH GPAAPPTSAP  1140
AKSRPLSLSL YC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	65	RRRKEK
2	60	67	RRRKEKKE
3	282	303	KRKNMAGSSSQGRKAASSRKRK
4	299	304	SRKRKM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008795938.1	0.0	homeobox-DDT domain protein RLT3-like
TrEMBL	A0A1D1ZKS4	0.0	A0A1D1ZKS4_9ARAE; Homeobox-leucine zipper protein HDG6
STRING	XP_008795938.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-120	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Spipo31G0000300