PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0017700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CO-like
Protein Properties Length: 263aa    MW: 28846.4 Da    PI: 7.1652
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0017700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-07947439
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39
                      +C+ +   ++qlfC+    +lC+ C  + H g   H++
  Spipo28G0017700  9 SYCDACRGSPAQLFCRVHAAFLCAACDGHLHGGaarHER 47
                     68*****************************55888976 PP
2zf-B_box27.37.4e-094890339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      ++C+ +e+ +++  C+ +   lC+ C +  H+       H++
  Spipo28G0017700 48 VWVCEICEQAPATVVCKADAAALCAACDSDVHSAstlsrrHQR 90
                     689*****************************65677777775 PP
3CCT68.51.8e-23215258144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+K +rY+sRKa+AesRpRvKGrFvk++
  Spipo28G0017700 215 REARVMRYREKRRTRRFDKIVRYASRKAYAESRPRVKGRFVKEN 258
                      9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.125650IPR000315B-box-type zinc finger
SMARTSM003363.4E-5650IPR000315B-box-type zinc finger
PfamPF006435.3E-6947IPR000315B-box-type zinc finger
CDDcd000215.97E-61050No hitNo description
PROSITE profilePS5011910.6234693IPR000315B-box-type zinc finger
PfamPF006431.9E-74791IPR000315B-box-type zinc finger
SMARTSM003362.7E-85193IPR000315B-box-type zinc finger
PROSITE profilePS5101716.618215257IPR010402CCT domain
PfamPF062037.7E-18215257IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGEEMRVKSY CDACRGSPAQ LFCRVHAAFL CAACDGHLHG GAARHERVWV CEICEQAPAT  60
VVCKADAAAL CAACDSDVHS ASTLSRRHQR FPVVPFSQSL AGDWSLDRSA AENSYAHSEE  120
LPRTSPELKA ADCCYYYHRQ VSDGDPYFAL EEVVAAPQPV VFTTDDGCMD MNSGGPKPLY  180
GGDAATPSAE ESAALETTEH GGGWAAPLVA RAVDREARVM RYREKRRTRR FDKIVRYASR  240
KAYAESRPRV KGRFVKENTV IY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414699.17e-64PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ940T92e-54COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLM0S2E92e-62M0S2E9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P23420_0013e-63(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.18e-42CONSTANS-like 3